View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_42 (Length: 288)
Name: NF6540_high_42
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 269
Target Start/End: Original strand, 54692793 - 54693042
Alignment:
| Q |
8 |
tgagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgt |
107 |
Q |
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| T |
54692793 |
tgagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgt |
54692892 |
T |
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| Q |
108 |
ttgtagacaagatgttataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatt |
207 |
Q |
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| T |
54692893 |
ttgtagacaagatgttataatatttggtagtgcccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaatt |
54692992 |
T |
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| Q |
208 |
tctttgcctctgctgtgagctccaatccacctccccttcttcttatgatggactgaagttcc |
269 |
Q |
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| T |
54692993 |
tctttgc------------caccaatccacctccccttcttcttatgatggactgaagttcc |
54693042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 54700152 - 54700403
Alignment:
| Q |
9 |
gagatgaattgcagtattatctcaaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtt |
108 |
Q |
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| T |
54700152 |
gagataaattgcaatattgtctgaaatgtagatagggttgccacttcaacatcttgtaataagctaatcaaagccact-----gtttgatggtcattgtt |
54700246 |
T |
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| Q |
109 |
tgtagacaagatgttataatatttggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactaccttaatttctagatatcaagaattt |
208 |
Q |
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| T |
54700247 |
tgtagataagatgttgctatgtttggtatttcccttcaaatttgccaaggctttggagatggcctttttcactacctt----tcttgatgtcatgaattt |
54700342 |
T |
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| Q |
209 |
ctttgcctctgctgtgagctccaatccacctccccttcttcttatgatggactgaagttcc |
269 |
Q |
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| T |
54700343 |
cttagcctctgcagtgagctccaatccatctccccttcttcttatgatggattgaagttcc |
54700403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 186
Target Start/End: Original strand, 54688230 - 54688379
Alignment:
| Q |
32 |
aaatgtagatagtgtagccaattcaacatcttgtaataagttaatcaatgtcacttcactgattgatggtctttgtttgtagacaagatgttataatatt |
131 |
Q |
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| T |
54688230 |
aaatgtagatagggttgccacttcaacatcttgtaataagttaatcaaag-----ccactgtttgatggtctttgtttgtagataagatgttgctatttt |
54688324 |
T |
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| Q |
132 |
tggtagtgtccttcaaatttgtcaaggctttggaaatggcctttttcactacctt |
186 |
Q |
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| T |
54688325 |
tggcatttcccttcaaatttaccaaggttttggagattgactttctcactacctt |
54688379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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