View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_46 (Length: 262)
Name: NF6540_high_46
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_46 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 40207446 - 40207694
Alignment:
| Q |
1 |
acatactccccattgttcaccaaattcaagaatcaagattgttttttcatcacaataattagttggaaatttttataaacctaactcttgttgattagtc |
100 |
Q |
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| T |
40207446 |
acatactccccattgttcaccaaattcaagaatcaagattgttttttcatcacaata-ttagttggaaatttttataaacctaactctggttgattagtc |
40207544 |
T |
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| Q |
101 |
ttttatcagaacaaagatggttgacaagaatggtagcacgaatcatcaccaaacatttgatgtctccattgatcaacaaagagattctaagtacttcgac |
200 |
Q |
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| T |
40207545 |
ttttatcataacaaagatggttgacaagaatggtagcacgaatcatcaccaaacatttgatgtctccattgatcaacaaagagattctaagtacttcgac |
40207644 |
T |
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| Q |
201 |
gatgatggtcgcgtcaaaagaaccggtaattaagtattgtcttttatttt |
250 |
Q |
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| T |
40207645 |
gatgatggtcgcgtcaaaagaaccggtaattaagtattgacttttatttt |
40207694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 73 - 235
Target Start/End: Original strand, 40203335 - 40203497
Alignment:
| Q |
73 |
ttataaacctaactcttgttgattagtcttttatcagaacaaagatggttgacaagaatggtagcacgaatcatcaccaaacatttgatgtctccattga |
172 |
Q |
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| T |
40203335 |
ttataaacctaacttgggttaattagtcttttatcataacaaagatggttgaaaagaatggtagcacgaatcatcaccaaacatttgatgtctccattga |
40203434 |
T |
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| Q |
173 |
tcaacaaagagattctaagtacttcgacgatgatggtcgcgtcaaaagaaccggtaattaagt |
235 |
Q |
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| T |
40203435 |
tcaacaaagagattctaagtttttcgacgacgatggtcgtgtcaaacgaaccggtaattaagt |
40203497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 40199205 - 40199361
Alignment:
| Q |
94 |
attagtcttttatcagaacaaagatggttgacaagaatggtagcacgaatcatcaccaaacatttgatgtctccattgatcaacaaagagattctaagta |
193 |
Q |
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||||||| ||| ||| ||||||||||||||| ||||| || |||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
40199205 |
attagtcctttgtcataacaaagatggttgaaaagaacggaagcaagaatcatcaccaaacatttgatgtctccattgaccaacaaagagattccaagta |
40199304 |
T |
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| Q |
194 |
cttcgacgatgatggtcgcgtcaaaagaaccggtaattaagtattgtcttttatttt |
250 |
Q |
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| T |
40199305 |
cttcgacgatgatggtcgcatcaaaagaacaggtaattaagtattgtcttttatttt |
40199361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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