View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_47 (Length: 254)
Name: NF6540_high_47
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_47 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 15 - 254
Target Start/End: Original strand, 11106279 - 11106516
Alignment:
| Q |
15 |
tataccatagaaccaagcaaaggaattaatgtttgcaaaacgcaggttccgctgaaatttccaaaatatatattcataaaagtactttcggccataatgc |
114 |
Q |
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| T |
11106279 |
tataccatagaaccaagcaaaggaattaatgtttgcaaaacgcaggttccgctgaaatttccaaaatat--attcataaaagtactttcggccataatgc |
11106376 |
T |
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| Q |
115 |
ttttatcatgcacatgtactagacccaaaagtgccttctatcttgcacgtttggttcatatttaattgtagtagtagtattggtactataaactaaatac |
214 |
Q |
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| T |
11106377 |
ttttatcatgcacatggactagacccaaaagtgccttctatcttgcacgtttggttcatatttaattgtagtagtagtattggtactataaactaaatac |
11106476 |
T |
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| Q |
215 |
tctatgctaagtcttcttctattatttgtaataaaaaact |
254 |
Q |
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| T |
11106477 |
tctatgctaagtcttcttctattatttgtaataaaaaact |
11106516 |
T |
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