View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_63 (Length: 223)
Name: NF6540_high_63
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 505598 - 505395
Alignment:
| Q |
1 |
ggagacaaatattacaattaagcctaattatttctagcttggtcttctagtttttctctctgaataatattagactaatatattttgttaatgatgtaat |
100 |
Q |
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| T |
505598 |
ggagacaaatattacatttaagcctaattatttctagctcggtcttctagtttttctctctaaataatattagactaatatatgttgttaatgatgtaat |
505499 |
T |
|
| Q |
101 |
gcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgccc |
200 |
Q |
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| T |
505498 |
gcatgaaggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttctctgttgcgtatttcttatgccc |
505399 |
T |
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| Q |
201 |
ttca |
204 |
Q |
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|||| |
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| T |
505398 |
ttca |
505395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 16702318 - 16702221
Alignment:
| Q |
107 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttca |
204 |
Q |
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| T |
16702318 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttca |
16702221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 17676554 - 17676457
Alignment:
| Q |
107 |
aggcttggagcaatggagtgtataagagtgttgagcatcgagttgtgacaaacccaagagtagaaaggttttctgttgcgtatttcttatgcccttca |
204 |
Q |
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| T |
17676554 |
aggcttggagtaatggactttacaagagtgttgagcatcgagttgttacaaatccaaaagttgaaaggttctctatggcgtatttcttgtgcccttca |
17676457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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