View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_high_8 (Length: 498)
Name: NF6540_high_8
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 487
Target Start/End: Original strand, 3127382 - 3127820
Alignment:
| Q |
18 |
atttcaaaatcattagagggacttgaatgaattagatatgtatttctccaacaattacacaagtatttttacaaagagttgtttgagatgcactaaaaat |
117 |
Q |
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| T |
3127382 |
atttcaaaatcattagagggacttgaatgaattagatatgtatttctccaacaattacacaagtatttttacaaagagttgtttgagatgcactaaaaat |
3127481 |
T |
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| Q |
118 |
ctccatagataatttctattagcatgagtaacaaccatgtgggagtcactacatagaaacatcttgatggctctgagctctgctactactatatgtaatc |
217 |
Q |
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| T |
3127482 |
ctccttagataatttctattagcatgagtaacaaccatgtgggagtcactacatagaaacatcctgatggctctgagctctg---ctactatatgtaatc |
3127578 |
T |
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| Q |
218 |
cacgaacgcaaacttcttactctgc--ttgagacaaatacaaagcatcactacctaggtaacaataaaatgctattaaacattcgaccaccggttctaaa |
315 |
Q |
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| T |
3127579 |
cacgaacgcaaacttcttactctgcttttgagacagatacaaagcatcactac------------------ctattaaacattcaaccaccggttctaaa |
3127660 |
T |
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| Q |
316 |
aacttgcatgccagtttgagttttatatgcatttgata---aannnnnnnagaaattatgaaagtgtatgttagaaatctacactttcttcactaatgcc |
412 |
Q |
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| T |
3127661 |
aacttgcatgccagtttgagttttatatgcatttgatattttttttttttagaaattatgaaagtgtatgttagaaatctacactttcttcactaatgcc |
3127760 |
T |
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| Q |
413 |
acaatattgtaattttctgactcctatttttatagagcaataatctcctaatcttttctgttttacgtgtttcat |
487 |
Q |
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| T |
3127761 |
acaatattgtaattttctgact---------------caataatctcctaatcttttctgttttacgtgtttcat |
3127820 |
T |
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