View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6540_low_11 (Length: 456)
Name: NF6540_low_11
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 439
Target Start/End: Complemental strand, 23986347 - 23985922
Alignment:
| Q |
14 |
atataagtcaaattatatacacataacacatgaattcgagtatacaagtctaatttacactaaattagagaagggcgaaatagaaacatacgattttttg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23986347 |
atataagtcaaattatatacacataacacatgaattcgagtatacaagtctaatttacactaaattagagaagggcgaaatagaaacatacgattttttg |
23986248 |
T |
|
| Q |
114 |
aacaattgaagagatcgccaggaaagccgttgatagtgaaagcatcagatgctattttatcgcctgtttcgagttctttttggataatctcctcaacatt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23986247 |
aacaattgaagagatcgccaggaaagccgttgatagtgaaagcatcagatgctattttatcgcctgtttcgagttctttttggataatctcctcaacatt |
23986148 |
T |
|
| Q |
214 |
tccatcataccaatcacctagtattattggtacttccttgtaaggtttaggaaatggaaatcgaccagaacgaggttgaatgataatggcgccgtgaact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
23986147 |
tccatcataccaatcacctagtattattggtacttccttgtaaggtttaggaaatggaaatcgaccagaacgaggttgaatgataatggcaccgtgaact |
23986048 |
T |
|
| Q |
314 |
gttgcacgtacaactgatgcatgagcatgccaccataatgttccttcttgttttgtcacattaaatttgtatgtaaatttattttcaggacgaattgaac |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23986047 |
gttgcacgtacaactgatgcatgagcatgccaccataatgttccttcttgttgtgtcacattaaatttgtatgtaaatttattttcaggacgaattgaac |
23985948 |
T |
|
| Q |
414 |
attgtgttatatattcaggtccatct |
439 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
23985947 |
attgtgttatatattcaggtccatct |
23985922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 251 - 428
Target Start/End: Complemental strand, 43725155 - 43724978
Alignment:
| Q |
251 |
ttgtaaggtttaggaaatggaaatcgaccagaacgaggttgaatgataatggcgccgtgaactgttgcacgtacaactgatgcatgagcatgccaccata |
350 |
Q |
| |
|
||||| ||||| | ||||| ||||||||| ||||||||||||||||||| || | ||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
43725155 |
ttgtagggtttggaaaatgaaaatcgacccgaacgaggttgaatgataaaagcactatgaactgttgcacatacaactgatgtgtgagcatgccaccata |
43725056 |
T |
|
| Q |
351 |
atgttccttcttgttttgtcacattaaatttgtatgtaaatttattttcaggacgaattgaacattgtgttatatatt |
428 |
Q |
| |
|
||||| || |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
43725055 |
atgttactccttgttgtgtcatattaaatttgtatgtaaatttattttcaggatgaattgaacattgggttatatatt |
43724978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 283 - 432
Target Start/End: Complemental strand, 43727077 - 43726928
Alignment:
| Q |
283 |
acgaggttgaatgataatggcgccgtgaactgttgcacgtacaactgatgcatgagcatgccaccataatgttccttcttgttttgtcacattaaatttg |
382 |
Q |
| |
|
|||||||||||||||| || || ||||||||||||||||| || |||| ||||||||||||||||||||| || ||| || ||||| |||||||||| |
|
|
| T |
43727077 |
acgaggttgaatgatataagcaccatgaactgttgcacgtactacagatgtgtgagcatgccaccataatgttactccttattgtgtcatattaaatttg |
43726978 |
T |
|
| Q |
383 |
tatgtaaatttattttcaggacgaattgaacattgtgttatatattcagg |
432 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| |||||||||||||| |
|
|
| T |
43726977 |
tatgtaaatttatttttaggaagaattgaacattaggttatatattcagg |
43726928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 245 - 372
Target Start/End: Complemental strand, 23974826 - 23974699
Alignment:
| Q |
245 |
acttccttgtaaggtttaggaaatggaaatcgaccagaacgaggttgaatgataatggcgccgtgaactgttgcacgtacaactgatgcatgagcatgcc |
344 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||| ||| ||||||||||||| | || || | |||||| | ||||| |||||||| ||||||||||| |
|
|
| T |
23974826 |
acttgcttgtagggtttaggaaatggaaatcgatttgaatgaggttgaatgatgaaagcaccataaactgtggaacgtagaactgatgtatgagcatgcc |
23974727 |
T |
|
| Q |
345 |
accataatgttccttcttgttttgtcac |
372 |
Q |
| |
|
| |||| ||||||||||||| |||||| |
|
|
| T |
23974726 |
aaaataaagttccttcttgttgtgtcac |
23974699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University