View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_13 (Length: 447)
Name: NF6540_low_13
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 24 - 437
Target Start/End: Original strand, 43527315 - 43527733
Alignment:
| Q |
24 |
ttctattgtttttaacttacatgttagctttagtatccaagaaagtattattagttgtggatttgtgactggtgact--gataagtccatgcatgcatgc |
121 |
Q |
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| T |
43527315 |
ttctattgtttttaacttacatgttagctttaggattcaagaaagtattattagttgtggatttgtgactggtgactgcgataagtccatgcatgcatgc |
43527414 |
T |
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| Q |
122 |
tcgtaaaatgcc----aataagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaa------atatagttgagt |
211 |
Q |
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| T |
43527415 |
tcgtaaaatgccaattaataagatgttgactatgaaattgttg-tagtatgaatgatggaatggttggtgcaaagctaacaaatatatatatagttgagt |
43527513 |
T |
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| Q |
212 |
ttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgatgtatct |
311 |
Q |
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| T |
43527514 |
ttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtgacgtgtagtttcttatagaaaactgatatttgcttcgatgtatct |
43527613 |
T |
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| Q |
312 |
tgcatggtgagcca-catccaatccttttattttctataatcaagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatga- |
409 |
Q |
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| T |
43527614 |
ttcatggcgagccatcatccaatccttttattttct----------atgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatgaa |
43527703 |
T |
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| Q |
410 |
--attattcatttgatagtggatgcctatg |
437 |
Q |
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| T |
43527704 |
ttattattcatttgatagtggatgcctatg |
43527733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 117 - 267
Target Start/End: Original strand, 43542722 - 43542874
Alignment:
| Q |
117 |
catgctcgtaaaatgccaat-----aagatgttgactatgaaattgttgctagtatgaatgatggaatggttggtgcaaagctaacaaatatagttga-g |
210 |
Q |
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| T |
43542722 |
catgctcgtaaaaagccaattgctgaagatgtagactatgaaattgttgctagtatgactgatggaatggttggtgcagagctagctaacatagttgagg |
43542821 |
T |
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| Q |
211 |
tttctgctatcaattaatatgatgtgggactcaaggactgaggtaacaaatctgtga |
267 |
Q |
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| T |
43542822 |
ttgctgctatc----aatatgatgcgggactcgaggaccgaggtaataaatccgtga |
43542874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 43543075 - 43543154
Alignment:
| Q |
341 |
ttttctataatcaagcatgtaaataaaatgtctgtttatccaaccagaagagctttatttatcacatgaattattcattt |
420 |
Q |
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| T |
43543075 |
ttttctaaaatcaagcatgcaaataaaaggtctgtttatccaaccataagtgctttatttattgcatgaattattcattt |
43543154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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