View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_15 (Length: 441)
Name: NF6540_low_15
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 180 - 423
Target Start/End: Original strand, 52325044 - 52325287
Alignment:
| Q |
180 |
agcaatgaattatagttagtagcatgtgtgtaaatgtatgtactcacttatttttgggtgtttttaggtccctttgagaaatttattcgaagtacaaagg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52325044 |
agcaatgaattatagttagtagcatgtgtgtaaatgtatatactcacttatttatgggtgtttttaggtccctttgagaaatttattcgaagtacaaagg |
52325143 |
T |
|
| Q |
280 |
tgagaacactagaaggtagtgaatatgtgagaaaggtgtcagaaaattgcattgctcatatgaaatctgaaggaacatatggtgatgcagaagaaaaagc |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52325144 |
tgagaacactagaaggtagtgaatatgtgagaaaggtgtcagaaaattgcattgcccatatgaaatctgaaggaacatatggcgatgcagaagaaaaagc |
52325243 |
T |
|
| Q |
380 |
cattcaagaatttagagaagcttttaaggatcaattttttccac |
423 |
Q |
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| T |
52325244 |
cattcaagaatttagagaagcttttaaggatcaattttttccac |
52325287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 221 - 423
Target Start/End: Original strand, 52329515 - 52329717
Alignment:
| Q |
221 |
actcacttatttttgggtgtttttaggtccctttgagaaatttattcgaagtacaaaggtgagaacactagaaggtagtgaatatgtgagaaaggtgtca |
320 |
Q |
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| T |
52329515 |
actcatttatttatgggtgtgtttaggtccctttgagaagtttattcgatgtacaaaggtgagaacactagaaggtagtgaatatgtgagaaaggtgtca |
52329614 |
T |
|
| Q |
321 |
gaaaattgcattgctcatatgaaatctgaaggaacatatggtgatgcagaagaaaaagccattcaagaatttagagaagcttttaaggatcaattttttc |
420 |
Q |
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| T |
52329615 |
gaaaattgcattgcccatatgaaatttgaaggaacatatggcgatgcagaagaaaaagccattcaagaacttagagaagccttcaaggttcaattttttc |
52329714 |
T |
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| Q |
421 |
cac |
423 |
Q |
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||| |
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| T |
52329715 |
cac |
52329717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 52324797 - 52324903
Alignment:
| Q |
22 |
tggaagggcaaaactccatctcagctctttgaatcccttgaattctacagagatatcatcaaaggtagcaacatactactccataatgatcatatgcccc |
121 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52324797 |
tggaaaggcaaaactccatctcagctctttgaatcccttgaattctatcgagatatcatcaaaggtagcaacatactactccataatgatcatatgcccc |
52324896 |
T |
|
| Q |
122 |
taatcat |
128 |
Q |
| |
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||||||| |
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| T |
52324897 |
taatcat |
52324903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 265 - 359
Target Start/End: Original strand, 52332795 - 52332889
Alignment:
| Q |
265 |
ttcgaagtacaaaggtgagaacactagaaggtagtgaatatgtgagaaaggtgtcagaaaattgcattgctcatatgaaatctgaaggaacatat |
359 |
Q |
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| T |
52332795 |
ttcgaagtacaaaggtgagaacactagacggtagtgaatatgtgagaaaggtgtcagaaaattgcattgcccatatgaaatctgaaggaacatat |
52332889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 22 - 100
Target Start/End: Original strand, 52332396 - 52332474
Alignment:
| Q |
22 |
tggaagggcaaaactccatctcagctctttgaatcccttgaattctacagagatatcatcaaaggtagcaacatactac |
100 |
Q |
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| T |
52332396 |
tggaagggcaagactccatctcagctctttgaatcccttgaattctaccgagatatcatcaaaggtaacaacatactac |
52332474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 52328475 - 52328590
Alignment:
| Q |
22 |
tggaagggcaaaactccatctcagctctttgaatcccttgaattctacagagatatcatcaaag----gtagcaac--atactactccataatgatcata |
115 |
Q |
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||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |||||||| ||| |
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| T |
52328475 |
tggaagggcaagactccgtctcagctcttcgaatcccttgatttctacagagatatcatcaaaggtacgtagcaacatatactactctataatgataata |
52328574 |
T |
|
| Q |
116 |
tgcccctaatcatttg |
131 |
Q |
| |
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| || ||||| ||||| |
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| T |
52328575 |
tacctctaataatttg |
52328590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 358
Target Start/End: Original strand, 52321994 - 52322108
Alignment:
| Q |
244 |
taggtccctttgagaaatttattcgaagtacaaaggtgagaacactagaaggtagtgaatatgtgagaaaggtgtcagaaaattgcattgctcatatgaa |
343 |
Q |
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||||||||||||||||||| |||||| | |||| | | ||| | || ||| ||||||||||||| ||||||||||||||||| |||||| ||||||| |
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| T |
52321994 |
taggtccctttgagaaattgattcgagggggaaagttaaaaactttggacggtcgtgaatatgtgaggaaggtgtcagaaaattgtattgcttatatgaa |
52322093 |
T |
|
| Q |
344 |
atctgaaggaacata |
358 |
Q |
| |
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|||||| |||||||| |
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| T |
52322094 |
atctgatggaacata |
52322108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 216 - 390
Target Start/End: Original strand, 9179216 - 9179381
Alignment:
| Q |
216 |
tatgtactcacttatttttgggtgtttttaggtccctttgagaaatttattcgaagtacaaaggtgagaacactagaaggtagtgaatatgtgagaaagg |
315 |
Q |
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||||||||||| ||| | |||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
9179216 |
tatgtactcacgtatctatgggagtgtttaggtctctttgagaaatttattcgaagta---------gaacactagaaggtagtgaatatgtgagaaagg |
9179306 |
T |
|
| Q |
316 |
tgtcagaaaattgcattgctcatatgaaatctgaaggaacatatggtgatgcagaagaaaaagccattcaagaat |
390 |
Q |
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| T |
9179307 |
tatcagaaaattgcattgcccatatgaaatctgaaggaacatatggtgatgcagaagaaaaagccattcaagaat |
9179381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 9173779 - 9173814
Alignment:
| Q |
64 |
ttctacagagatatcatcaaaggtagcaacatacta |
99 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
9173779 |
ttctacagagatatcatcaaaggtaacaacatacta |
9173814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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