View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_16 (Length: 439)
Name: NF6540_low_16
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 36250265 - 36250000
Alignment:
| Q |
17 |
agtatggaatgaaacatatcttatttgttaatcaaactctaacctcgacctcatcctttaaaataccgatccagaatttccatttttccttcttctcaat |
116 |
Q |
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| T |
36250265 |
agtatggaatgaaacatatcttatttgttaatcaaactccaacctcgatctcatcctttaaaagaccgatccagaatttccatttttccttcttctcaat |
36250166 |
T |
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| Q |
117 |
ttctcgttcattcatgcatggcatctgtaa-ttaatgaaggaaataaaacatgtaccaaacttttccttctcaagcatgacacgaaggctacggatctga |
215 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36250165 |
ttctcgttcattcatgcatggcatctgaaaattaatgaaggaaataaaacatgtaccaaacttttccttctcaagcatgacacgaaggttacggatctga |
36250066 |
T |
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| Q |
216 |
acttttaaaaaatgaaagatgaaagtgaagaggaacaaccaaaaattatgtgc-ttcgtgaattga |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
36250065 |
acttttaaaaaatgaaagatgaaagtgaagaggaacaaccaaaatttatgtgctttcgtgaattga |
36250000 |
T |
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