View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_2 (Length: 698)
Name: NF6540_low_2
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 455 - 693
Target Start/End: Original strand, 33887493 - 33887725
Alignment:
| Q |
455 |
ctgaagaattggaaaagggaaactcatttcgagaatacagaattttgagaaacaaacctctggatctaacggtgtagtgtcgagctccttaacgtcatcg |
554 |
Q |
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| T |
33887493 |
ctgaggaattggaaaagggaaactcatttcgagaatacagaattttgagaaacaaacctctggatctaacggtgtagtgtcgagctccttaacgtc---- |
33887588 |
T |
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| Q |
555 |
tcgtcggtttcagtaaccttgccggagctgcagcaagtcaacagcggagtgtgatcggagcgaaactcgtcagaagccgacgaaagaatattttctgcag |
654 |
Q |
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| T |
33887589 |
--gttggtttcagtaaccttgccggagctgcagcaagtcaacagcggagtgtgatccgagcgaaactcgtcggaagccgacgaaagaatattttctgcag |
33887686 |
T |
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| Q |
655 |
cttcagcgagcgagtttggtagttgatgcttcatctcag |
693 |
Q |
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| T |
33887687 |
cttcagctagcgagtttggtagttgatgcttcatttcag |
33887725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 33887082 - 33887260
Alignment:
| Q |
9 |
acagggacagggaatagatcactgctcacattccgtatcttgtgtcactcatttcaaaataaaagttaaaataatttatagcaggtggtagttttattat |
108 |
Q |
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| T |
33887082 |
acagggacagggaatagatcactgctcacattccttatcttgtgtcactcatttcaaaataaaagttaaaataatttatagcaggtggtagttttattat |
33887181 |
T |
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| Q |
109 |
attcttacttctcagcaaatctcttccgctcttccctctcaaaatttgcaaagaattcatcaatctcctcttccctgaa |
187 |
Q |
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| T |
33887182 |
atacttacttctcagcaaatctcttccgctcttccctctcaaaatttgcaaagaattcatcaatctccgcctccctgaa |
33887260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 293 - 388
Target Start/End: Original strand, 33887347 - 33887442
Alignment:
| Q |
293 |
tacctgaacgattttaaattgtggttggttttgtctaccgtttcaaaacacttagttttcagctgcaagatcatcacagtaattcacaaatattag |
388 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887347 |
tacctgaacgattttaaattgtggttcgttttgtctaccgtttcaaaacacttagttttcagctgcaagatcatcacagtaattcacaaatattag |
33887442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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