View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_24 (Length: 384)
Name: NF6540_low_24
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 368
Target Start/End: Original strand, 29906307 - 29906667
Alignment:
| Q |
8 |
gacatcatcaaattaagggcatctcttccaaattctataaaatatcttgacgggtattataaatgtttgtttgaccattcaatctatgttttgtcgttac |
107 |
Q |
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| T |
29906307 |
gacatcattaaattaagggcatctcttccaaattctataaaatatcttgacgggtattataaatgtttgtttgaccattcaatctatgttttgtcgttac |
29906406 |
T |
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| Q |
108 |
taattaaacatatggaggggactacaacaaatgtggcgtggggcttctattcaacttgtggtatgaattttttgagactgaattttattgcatcatcatg |
207 |
Q |
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| T |
29906407 |
taattaaacatatggaggggactacaacaaatgtggcgtggggcttctattcaacttgtggtatgaattttttgagactgaattttattgcatcatcatg |
29906506 |
T |
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| Q |
208 |
tgattctctctagactctagggtacttttcaagatgtgcatcacgtatctatgaacaacaaannnnnnnctaagcttaaattcaaaagtttgaattcaag |
307 |
Q |
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| T |
29906507 |
tgattctctctagactctagggtacttttcaagatgtgcatcacgtatctatgaacaacaaatttttttctaagcttaaattcaaaagtttgaattcaag |
29906606 |
T |
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| Q |
308 |
tagcacatgtattaccattcaaataaaatcaatatagataaaacaatttgtaatatttaac |
368 |
Q |
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| T |
29906607 |
tagcacatgtattaccattcaaataaaatcaatatagataaaacaatttgtaatatttaac |
29906667 |
T |
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