View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_27 (Length: 366)
Name: NF6540_low_27
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 41316163 - 41315805
Alignment:
| Q |
1 |
tctcttgcacttactagtctctcttgtgctccacctcgcaatttctccaacctcatcgttccattcatttgttgcattttgaacacttttatcaaatttg |
100 |
Q |
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| T |
41316163 |
tctcttgcacttactagtctctcttgtgctccacctcgcaatttctccaacctcatcgttccattcatttgttgcattttgaacacttttatcaaatttg |
41316064 |
T |
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| Q |
101 |
tcaatccaccaatgaagaacatcaagcttccaaatatgccaagccaaacccaagtcccaccctgaatcataatcacaacaatccaagcataagattaaga |
200 |
Q |
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| T |
41316063 |
tcaatccaccaatgaagaacatcaagcttccaaatatgccaagccaaacccaagtcccaccctgaatcataatcacaacaatccaagcataagattaaga |
41315964 |
T |
|
| Q |
201 |
aacataagcatgtttctcaaaaaagaaaagggttaaattttgggcatgtttggattgaatctttggattgattatttgaacttatataatgtcattgcca |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41315963 |
aacatatgcatgtttctcaaaaaagaaaagggttaaattttgggcatgtttggattgaatctttggattgattatttgaacttatataatgtcattgcca |
41315864 |
T |
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| Q |
301 |
cattggcataaacactttgtgacatcatcttgataacttatgaaaacaactgatgatgt |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41315863 |
cattggcataaacactttgtgacatcatcttgataacttatgaaaacaacttatgatgt |
41315805 |
T |
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