View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_low_30 (Length: 346)

Name: NF6540_low_30
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_low_30
NF6540_low_30
[»] chr4 (4 HSPs)
chr4 (13-330)||(48966125-48966442)
chr4 (39-330)||(48958963-48959254)
chr4 (33-94)||(48963098-48963159)
chr4 (242-330)||(48963308-48963396)
[»] chr8 (1 HSPs)
chr8 (168-330)||(12640553-12640715)
[»] chr2 (4 HSPs)
chr2 (168-330)||(13441151-13441313)
chr2 (159-330)||(13449305-13449476)
chr2 (228-330)||(13462395-13462497)
chr2 (33-94)||(13441016-13441077)
[»] chr5 (1 HSPs)
chr5 (255-330)||(12541711-12541786)
[»] chr7 (1 HSPs)
chr7 (178-330)||(3416602-3416754)
[»] chr6 (2 HSPs)
chr6 (256-330)||(12589259-12589333)
chr6 (258-330)||(12482527-12482599)


Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 48966125 - 48966442
Alignment:
Q  13 aagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgctccagcgtatagtttgcc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  48966125 aagggtacaagaagtcaccaatgatacagtcaggtggatctttctccatgaaattctgaattggttcttggaggagcattgctcctgcgtatagtttgcc 48966224  T
Q  113 ggaggaggcaagatcaggggtgttggacatggattcgacaccggaggggagaccaacttgttggtagggaaaatcaacggtgtgaatgcggaggaagaaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |    
T  48966225 ggaggaggcaagatcaggggtgttggacatggattcgacaccggaggggagaccaacttgttggtaggggaaatcaacggtgtgaatgcggaggaagaga 48966324  T
Q  213 ggatctatggagggaagagatttggaaaggaagttggcgttagagggagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgt 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48966325 ggatctatggagggaagagatttggaaaggaagttggcgttagagggagttgtgatgatggtgacttgttggccatgagatgcaaagatagttgctatgt 48966424  T
Q  313 cacacatagggatcatat 330  Q
    ||||||||||||||||||    
T  48966425 cacacatagggatcatat 48966442  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 330
Target Start/End: Original strand, 48958963 - 48959254
Alignment:
Q  39 cagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgctccagcgtatagtttgccggaggaggcaagatcaggggtgttgg 138  Q
    |||||||||||||| |||||||||||||  ||||| |||||  ||||||||||||| ||   |||||  |||||||||| | ||   || | ||||  ||    
T  48958963 cagtcaggtggatccttctccatgaaatcgtgaataggttcacggaggagcattgccccgtagtatatcttgccggaggtgtcaccgtcggaggtggagg 48959062  T
Q  139 acatggattcgacaccggaggggagaccaacttgttggtagggaaaatcaacggtgtgaatgcggaggaagaaaggatctatggagggaagagatttgga 238  Q
    |||| ||||| || |||   ||||| |||||||||||| ||||||| |  ||   ||||| |||||||||||| ||||| |     |  ||||||||||     
T  48959063 acatagattcaacgccgtcagggaggccaacttgttgggagggaaagttgacaaggtgaaggcggaggaagaagggatcaacacttgagagagatttggt 48959162  T
Q  239 aaggaagttggcgttagagggagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    || ||||| || ||| |||||||| |||||||| || |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  48959163 aaagaagtgggagttggagggagtggtgatgattgtcacttgttggccatgggatgcaaacagagttgctatgtcacacatggggatcatat 48959254  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 48963098 - 48963159
Alignment:
Q  33 atgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc 94  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||| | ||||||||||||||    
T  48963098 atgatgcagtcaggtggatccttctccatgaaatcctgaattggtccgtggaggagcattgc 48963159  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 48963308 - 48963396
Alignment:
Q  242 gaagttggcgttagagggagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    ||||| |||||| |||||||| |||||||| ||||||||||||||| | || ||||| |||| ||||||||||| || ||| |||||||    
T  48963308 gaagtgggcgttggagggagtggtgatgattgtgacttgttggccacgggacgcaaacagagctgctatgtcacccaaaggaatcatat 48963396  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 168 - 330
Target Start/End: Complemental strand, 12640715 - 12640553
Alignment:
Q  168 acttgttggtagggaaaatcaacggtgtgaatgcggaggaagaaaggatctatggagggaagagatttggaaaggaagttggcgttagagggagttgtga 267  Q
    ||||||||| |||| || || |||||||||| ||||||||| || ||||| | | |||  |||||||||| || ||| | |||||| |||||||| ||||    
T  12640715 acttgttgggaggggaagtcgacggtgtgaaggcggaggaaaaacggatcgacgaaggagagagatttggtaaagaaatgggcgttggagggagtggtga 12640616  T
Q  268 tgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    |||| ||||||||||||||||| |||||||| | || ||||||||||| || ||| |||||||    
T  12640615 tgatcgtgacttgttggccatgggatgcaaacaaagctgctatgtcacccaaaggaatcatat 12640553  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 330
Target Start/End: Original strand, 13441151 - 13441313
Alignment:
Q  168 acttgttggtagggaaaatcaacggtgtgaatgcggaggaagaaaggatctatggagggaagagatttggaaaggaagttggcgttagagggagttgtga 267  Q
    ||||||||| ||||||| || |||||||| | |||||||||||| | | |   ||| |  ||||||||||  ||| | |  ||||| |||||||| ||||    
T  13441151 acttgttgggagggaaagtcgacggtgtggaagcggaggaagaaggaagccgcggatgagagagatttggttagggattgagcgttggagggagtggtga 13441250  T
Q  268 tgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    |||| ||||||||||||||| | |||||||| | ||||||||||||||| | |||||||||||    
T  13441251 tgattgtgacttgttggccacgggatgcaaacatagttgctatgtcacaaagagggatcatat 13441313  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 330
Target Start/End: Original strand, 13449305 - 13449476
Alignment:
Q  159 gggagaccaacttgttggtagggaaaatcaacggtgtgaatgcggaggaagaaaggatctatggagggaagagatttggaaaggaagttggcgttagagg 258  Q
    ||||| || ||||||||| |||| || |||||||||||||  || |||||  ||||| |   ||| |  |||||||||| |||| | || ||||| | ||    
T  13449305 gggaggccgacttgttgggaggggaagtcaacggtgtgaagacgaaggaatgaaggagcgtcggatgagagagatttggtaagggattttgcgttggcgg 13449404  T
Q  259 gagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    |||| |||||||  || ||||| |||||| | |||||||| | ||||||||||||| | | |||||||||||    
T  13449405 gagtggtgatgactgttacttgctggccacgggatgcaaacatagttgctatgtcaaaaagagggatcatat 13449476  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 330
Target Start/End: Original strand, 13462395 - 13462497
Alignment:
Q  228 agagatttggaaaggaagttggcgttagagggagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatca 327  Q
    |||||||||| |||| | | | |||| |||||||| |||||||  ||||| ||||||||| | |||||||| | | ||||||||||| | | ||||||||    
T  13462395 agagatttggtaagggattggacgttggagggagtggtgatgactgtgacgtgttggccacgggatgcaaacataattgctatgtcaaaaagagggatca 13462494  T
Q  328 tat 330  Q
    |||    
T  13462495 tat 13462497  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 13441016 - 13441077
Alignment:
Q  33 atgatacagtcaggtggatctttctccatgaaatactgaattggttcttggaggagcattgc 94  Q
    |||||||| || |||||||||||||||||||||| || ||| | | | ||||||||||||||    
T  13441016 atgatacaatctggtggatctttctccatgaaatcctcaatggatccatggaggagcattgc 13441077  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 330
Target Start/End: Original strand, 12541711 - 12541786
Alignment:
Q  255 gagggagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    |||||||| |||||||| ||||||||||||||||| |||||||| | ||||||||| ||||| | |||||||||||    
T  12541711 gagggagtggtgatgattgtgacttgttggccatgtgatgcaaacaaagttgctatatcacaaagagggatcatat 12541786  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 330
Target Start/End: Complemental strand, 3416754 - 3416602
Alignment:
Q  178 agggaaaatcaacggtgtgaatgcggaggaagaaaggatctatggagggaagagatttggaaaggaagttggcgttagagggagttgtgatgatggtgac 277  Q
    ||||||| || |||||||||| |||||||||||| ||| |     | | ||||||||| | ||| || ||||| || |||||||| |||||||| |||||    
T  3416754 agggaaagtcgacggtgtgaaggcggaggaagaagggagcggcataagaaagagattttgtaagaaatttggcattggagggagtggtgatgattgtgac 3416655  T
Q  278 ttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
     ||||||||||| |||||||| | || |||||| ||| | | |||||||||||    
T  3416654 atgttggccatgggatgcaaacatagctgctatatcagaaagagggatcatat 3416602  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 12589333 - 12589259
Alignment:
Q  256 agggagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    ||||||| ||| |||| ||||||||||||||| | |||||||| || ||||| |||||||| | |||||||||||    
T  12589333 agggagtggtggtgattgtgacttgttggccacgggatgcaaacagggttgcaatgtcacatagagggatcatat 12589259  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 330
Target Start/End: Complemental strand, 12482599 - 12482527
Alignment:
Q  258 ggagttgtgatgatggtgacttgttggccatgagatgcaaagagagttgctatgtcacacatagggatcatat 330  Q
    ||||| |||||||| ||||| || |||||| | |||||||| |||||||| || |  ||||||||||||||||    
T  12482599 ggagtggtgatgattgtgacatgatggccacgtgatgcaaacagagttgcaatcttgcacatagggatcatat 12482527  T

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