View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_31 (Length: 338)
Name: NF6540_low_31
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 38124938 - 38124659
Alignment:
| Q |
16 |
atgatagcgtaggaatcatctgaaaatcgatgtatggtacactaatgaacttgtgcaagagagtaa-aaaagaactacctccgtacaatacacaaaaaat |
114 |
Q |
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| T |
38124938 |
atgatagtgtaggaatcatctgaaaatcgatgtatggtacactaatgaacttgtgcaagagagtaaaaaaaaaactacctctgtacaatatacaaaaaat |
38124839 |
T |
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| Q |
115 |
gttaaaatcccttcgtaaacctctgcatgagttttagtgcaccagattgaagg-nnnnnnnnctaccttatacacaatattgaaccaagcttaattaata |
213 |
Q |
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| T |
38124838 |
gttaaaatccctttgtaaacttgtgcatgagttttagtgcatcatatcgaaggaaaaaaaaactaccttatatacaatattgaaccaagcttaattaaga |
38124739 |
T |
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| Q |
214 |
ttcaaatatatctaacatacgagttgtactctccataataaaaatcaacaacgtacgagttagaaatgtactctttcttt |
293 |
Q |
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| T |
38124738 |
tttaaatatatctaacatacgagttgtactctccataataaaaatcaacaacgtatgagttagaaatgtactctctcttt |
38124659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 38124645 - 38124613
Alignment:
| Q |
306 |
tcagcaaaatttgacacatctcacagttgtaat |
338 |
Q |
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| T |
38124645 |
tcagcaaaatttgacacatctcacggttgtaat |
38124613 |
T |
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