View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_low_33 (Length: 316)

Name: NF6540_low_33
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_low_33
NF6540_low_33
[»] chr6 (8 HSPs)
chr6 (68-303)||(16872409-16872644)
chr6 (14-162)||(16579102-16579250)
chr6 (14-162)||(16616130-16616278)
chr6 (19-188)||(16570495-16570665)
chr6 (44-147)||(17040614-17040717)
chr6 (191-283)||(16653577-16653669)
chr6 (211-265)||(16570245-16570299)
chr6 (158-190)||(16653497-16653529)
[»] chr2 (2 HSPs)
chr2 (44-149)||(32790585-32790690)
chr2 (91-132)||(237191-237232)
[»] chr1 (1 HSPs)
chr1 (91-132)||(7388573-7388614)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 68 - 303
Target Start/End: Complemental strand, 16872644 - 16872409
Alignment:
Q  68 atctttttggaaacacgcctgaatttctcaagctgtttgttgatcttgtcaaagctctcttgcaaccttccctagtcattattatgcatgacattcttca 167  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872644 atcttttcggaaacacgcctgaatctctcaagctgtttgttgatcttgtcaaagctctcttgcaaccttccctagtcattattatgcatgacattcttca 16872545  T
Q  168 attagatagaagaaatggatgaactattcttcgaatcctaaatgaaatgtagatagaagacactgagattatgggaacaagcaatggacacagaagagga 267  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872544 attagatcgaagaaatggatgaactattcttcgaatcctagatgaaatgtagatagaagacactgagattatgggaacaagcaatggacacagaagagga 16872445  T
Q  268 ttattctagaattgagccatagaaacatgaaggaaa 303  Q
    |||| |||||||||||| ||||||||||||||||||    
T  16872444 ttatgctagaattgagcaatagaaacatgaaggaaa 16872409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 16579250 - 16579102
Alignment:
Q  14 gaaacggccataaagtcttttagaactacgagagtcctgatataaagtttagggatctttttggaaacacgcctgaatttctcaagctgtttgttgatct 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16579250 gaaacggccataaagtcttttggaactacgagagtcctgatataaagtttagggatcttttcggaaacacgcctgattttctcaagctgtttgttgatct 16579151  T
Q  114 tgtcaaagctctcttgcaaccttccctagtcattattatgcatgacatt 162  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  16579150 tgtcaaagctctcttgcaaccttccccagtcattattatccatgacatt 16579102  T

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Target: chr6; HSP #3
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 14 - 162
Target Start/End: Original strand, 16616130 - 16616278
Alignment:
Q  14 gaaacggccataaagtcttttagaactacgagagtcctgatataaagtttagggatctttttggaaacacgcctgaatttctcaagctgtttgttgatct 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  16616130 gaaacggccataaagtcttttggaactacgagagtcctgatataaagtttagggatcttttcggaaacacgcctgattttctcaagctgtttgttgatct 16616229  T
Q  114 tgtcaaagctctcttgcaaccttccctagtcattattatgcatgacatt 162  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||    
T  16616230 tgtcaaagctctcttgcaaccttccccagtcattattatccatgacatt 16616278  T

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Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 16570665 - 16570495
Alignment:
Q  19 ggccataaagtcttttagaactacg-agagtcctgatataaagtttagggatctttttggaaacacgcctgaatttctcaagctgtttgttgatcttgtc 117  Q
    |||||||||||||| ||||| |||  ||||||||||||||||||||||||| |||||  ||||||| ||||||||||||||||||||||||||||||||     
T  16570665 ggccataaagtcttctagaattacatagagtcctgatataaagtttagggaccttttcagaaacacacctgaatttctcaagctgtttgttgatcttgtt 16570566  T
Q  118 aaagctctcttgcaaccttccctagtcattattatgcatgacattcttcaattagatagaagaaatggatg 188  Q
    || ||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  16570565 aatgctctcttgcaaccttccccagtcattattatccatggcattcttcaattagatagaagaaatggatg 16570495  T

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Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 44 - 147
Target Start/End: Original strand, 17040614 - 17040717
Alignment:
Q  44 agagtcctgatataaagtttagggatctttttggaaacacgcctgaatttctcaagctgtttgttgatcttgtcaaagctctcttgcaaccttccctagt 143  Q
    ||||||||| | ||||||||||||  ||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| || |||    
T  17040614 agagtcctgttgtaaagtttaggggccttttcggaaagacgcatgaatttctcaagctgtttgttgatattgtcaaagctctcttgcaacctttccaagt 17040713  T
Q  144 catt 147  Q
    ||||    
T  17040714 catt 17040717  T

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Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 191 - 283
Target Start/End: Original strand, 16653577 - 16653669
Alignment:
Q  191 ctattcttcgaatcctaaatgaaatgtagatagaagacactgagattatgggaacaagcaatggacacagaagaggattattctagaattgag 283  Q
    |||| |||||||||||  | ||||||||  |||| |||||||||||||||||||||||||| ||| || |||||||||| ||| |||||||||    
T  16653577 ctatgcttcgaatcctcgaggaaatgtacgtagaggacactgagattatgggaacaagcaacggaaaccgaagaggattcttcaagaattgag 16653669  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 265
Target Start/End: Complemental strand, 16570299 - 16570245
Alignment:
Q  211 gaaatgtagatagaagacactgagattatgggaacaagcaatggacacagaagag 265  Q
    ||||| |||||||| || ||||||||||||| |||||||||| || |||||||||    
T  16570299 gaaatctagatagaggaaactgagattatggaaacaagcaattgaaacagaagag 16570245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Original strand, 16653497 - 16653529
Alignment:
Q  158 acattcttcaattagatagaagaaatggatgaa 190  Q
    |||||||| ||||||||||||||||||||||||    
T  16653497 acattctttaattagatagaagaaatggatgaa 16653529  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 32790690 - 32790585
Alignment:
Q  44 agagtcctgatataaagtttagggatctttttggaaacacgcctgaatttctcaagctgtttgttgatcttgtcaaagctctcttgcaaccttccctagt 143  Q
    |||||||| || ||||||||||||| ||||  |||| ||| | ||||||||||||||||||||||||  |||||||| |||||||||||||||||| |||    
T  32790690 agagtccttatgtaaagtttagggacctttacggaaccacacatgaatttctcaagctgtttgttgacattgtcaaacctctcttgcaaccttccccagt 32790591  T
Q  144 cattat 149  Q
    ||||||    
T  32790590 cattat 32790585  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 237191 - 237232
Alignment:
Q  91 tttctcaagctgtttgttgatcttgtcaaagctctcttgcaa 132  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  237191 tttctcgagctgtttgttgatcttgtcaaagctctcttgcaa 237232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 7388614 - 7388573
Alignment:
Q  91 tttctcaagctgtttgttgatcttgtcaaagctctcttgcaa 132  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  7388614 tttctcgagctgtttgttgatcttgtcaaagctctcttgcaa 7388573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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