View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_34 (Length: 316)
Name: NF6540_low_34
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 49099314 - 49099009
Alignment:
| Q |
1 |
caacagaatctaatcaaccacttgctaatggtaaagaaaaacatgttgttaaacaagaagaagaaaaagaagataacgatgctcttgaattttgcacaca |
100 |
Q |
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| T |
49099314 |
caacagaatctaatcaaccacttgctaatggtaaagaaaaacatgttgttaaacaagaagaagaaaaagaagataacgatgctcttgaattttgcacaca |
49099215 |
T |
|
| Q |
101 |
actaacaggttcaattgttgttccattggctttgaggtctgctattgatcttgggatctttgacatcctatccaaagctggtaatagtgcacaactctct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49099214 |
actaacaggttcaattgttgttccattggctttgaggtctgctattgatcttgggatctttgacatcctatccaaagctggtaatggtgcacaactctct |
49099115 |
T |
|
| Q |
201 |
gcagatgatattgctgttaagattggaaccaaaaacccagaagcagcaacaatgttagatcgtcttcttaggttgttggcaagtcactctattctaaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49099114 |
gcagatgatattgctgttaagattggaaccaaaaacccagaagcagcaacaatgttagatcgtcttcttaggttgttggcaagtcactctattctaaact |
49099015 |
T |
|
| Q |
301 |
cctatg |
306 |
Q |
| |
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|||||| |
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| T |
49099014 |
cctatg |
49099009 |
T |
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