View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_38 (Length: 311)
Name: NF6540_low_38
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 5 - 300
Target Start/End: Complemental strand, 31041631 - 31041336
Alignment:
| Q |
5 |
gtcatgataaaagagtccccaattctgctccactccagctgccttctggtcctcatcgaacatcgcaaatataaacgcatttatagcttggtttggtctt |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31041631 |
gtcatgataaaagagtccccaattctgctccactccagctgccttctggtcctcatcgaacatcgcaaatataaacgcatctatagcttggtttggtctt |
31041532 |
T |
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| Q |
105 |
cttggtgtgcctttaccactctgcaaatgttgaatcaagtttgtgttatatgtcttagcattttccttacttgcgtaagggtcattccctgcagcaggcc |
204 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
31041531 |
cttggtgtgcctttaccactctgcaaatgttgaatcaagtttgtgttatatgtcttagcattttctttacttgtgtaagggtcattccctgcagcaggcc |
31041432 |
T |
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| Q |
205 |
aaccagtttctccaatgattagagaaacattttttgcatctattttttccaatgctgcataaattgaatcaaccattgcatcgaaaaggttagtat |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31041431 |
aaccagtttctccaataattagagaaacattttttgcatctattttttccaatgctgcataaattgaatcaaccattgcatcgaaaaggttagtat |
31041336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 31046284 - 31045984
Alignment:
| Q |
1 |
tcatgtcatgataaaagagtccccaattctgctccactccagctgccttctggtcctcatcgaacatcgcaaatataaacgcatttatagcttggtttgg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
31046284 |
tcatgtcatgataaaagagtccccaattctgctccactccagctgccttctggtcctcatcgaacatcgcaaatattaacacatttatagcttggtttgg |
31046185 |
T |
|
| Q |
101 |
tcttcttggtgtgcctttaccactctgcaaatgtt-gaatcaagtttgtgttatatgtcttagcattttccttacttgcgtaagggtcattccctgcagc |
199 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
31046184 |
tcttcttggtgtgcctttaccactctgcaaatgtttgaatcaagtttgtgttatatgtcttggcattttccttacttgtgtaagggtcattccctgcagc |
31046085 |
T |
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| Q |
200 |
aggccaaccagtttctccaatgattagagaaacattttttgcatctattttttccaatgctgcataaattgaatcaaccattgcatcgaaaaggttagta |
299 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
31046084 |
aggccaaccagtttctccaatgattagagaaacatcttttgcatctattttttccaatgctgcgtaaattgaatcaaccattgcatcgaaaagtttagta |
31045985 |
T |
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| Q |
300 |
t |
300 |
Q |
| |
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| |
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|
| T |
31045984 |
t |
31045984 |
T |
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