View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_39 (Length: 310)
Name: NF6540_low_39
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_39 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 39660736 - 39661029
Alignment:
| Q |
12 |
atgaatgagcgatgatgataaacctttagccaccaaaataaaaaggtataaacttagatgtatattatacaaataatcatcaataaaagataattaatac |
111 |
Q |
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| T |
39660736 |
atgaatgagcgacgatgataaacctttagccaccaaaataaaaaggtataaactttgatgtagattatacaaataatca---ataaaagataattaatac |
39660832 |
T |
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| Q |
112 |
tggaaattgttgtagtaaaagataaataatactggaaattgtttgtgtatcaaattacagaattgaaatcaaacagacaaaaattactaatagtcaaccg |
211 |
Q |
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| T |
39660833 |
tggaaattgttgtagtaaaagataaataatactggaaattgtttgtgtatcaaattacagaattgaaatcaaacagacaaaaattactaatagttaac-- |
39660930 |
T |
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| Q |
212 |
cacgtaggtgatgatatatacttttcacatcacaaagcaacatcgacattaaccgaactcgggaagccagcgtttgacatcatcaaatcagaggttact |
310 |
Q |
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| T |
39660931 |
cacgtaggtgatgatatatacttttcacatcacaacgcaacatcgacattaaccgaactcgggaagccagcgtttgacatcatcaaatcagaggttact |
39661029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 39656299 - 39656372
Alignment:
| Q |
127 |
taaaagataaataatactggaaattgtttgtgtatcaaattacagaattgaaatcaaacagacaaaaattactaa |
201 |
Q |
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| T |
39656299 |
taaaagataattaatactggaaattgtt-gtgtatcaaattacagaattgaaataaaaaagacaaaaattactaa |
39656372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 124
Target Start/End: Original strand, 39656297 - 39656328
Alignment:
| Q |
93 |
aataaaagataattaatactggaaattgttgt |
124 |
Q |
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| T |
39656297 |
aataaaagataattaatactggaaattgttgt |
39656328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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