View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6540_low_4 (Length: 572)
Name: NF6540_low_4
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 567
Target Start/End: Complemental strand, 37595887 - 37595306
Alignment:
| Q |
1 |
caggtttgttaaattcacattttctactacactaggtcaaatatagagcaaatttcannnnnnncatctacattatatatgtagcatggctttaaattgt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595887 |
caggtttgttaaattcacattttctactacactaggtcaaatatagagcaaatttcatttttttcatctacattatatatgtagcatggctttaaattgt |
37595788 |
T |
|
| Q |
101 |
ggttcaatttcgctccaaaccttttgatgttgtagagacttcaaaaccttttaggt----------------aaaccatgatataatatatgtaggttga |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37595787 |
ggttcaatttcgctccaaaccttttgatgttgtagagacttcaaaaccttttaggttgtcgaccacaatttaaaaccatgatataatatatgtaggttga |
37595688 |
T |
|
| Q |
185 |
attagtgtcttctcttannnnnnnnnnnnnnncagtacacatatataatagaaatagagtcattattctatgtatctagtgtagttcaaaattttcaatt |
284 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595687 |
attagtgtcttctcttatcttttttctttttt-agtacacatatataatagaaatagagtcattattctatgtatctagtgtagttcaaaattttcaatt |
37595589 |
T |
|
| Q |
285 |
taatttattgaaacaataccttcttttagtgatttatttcatttatcttagaacaaaaaatcaatcaaaagggtatgtgtcaaaattaatggcatagcca |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595588 |
taatttattgaaacaataccttcttttagtgatttatttcatttatcttagaacaaaaaatcaatcaaaagggtatgtgtcaaaattaatggcatagcca |
37595489 |
T |
|
| Q |
385 |
taaagaaactgtgtacttttttgctacatttgttacgaggttaacacaaattcactagactattccattttctatttttgtgtgtttcatattcaatttt |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37595488 |
taaagaaactgtgtacttttttgctacatttgttatgaggttaacacaaattcactagactattccattttctatttttgtgtgtttcatattcaatttt |
37595389 |
T |
|
| Q |
485 |
ctatgtaagaggcacaagtgccacatcaattagtgtcatgtggatctgcaaggaaacaaattatctccattatctgtgctcct |
567 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37595388 |
ctatgtaagaggcacaagtgccacatcaattagtgtcatgtggatctgcaaggaaacaaattatctccattatttgtgctcct |
37595306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University