View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_41 (Length: 308)
Name: NF6540_low_41
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_41 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 42630474 - 42630182
Alignment:
| Q |
16 |
tgtggagcactagcattgattaatatgatatatggaatttggaatgaaccattgaagtactactagtgctgatttttacacatacacaggtacactggat |
115 |
Q |
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| T |
42630474 |
tgtggagcattagcattgattaatatgatatatgaaatttggaatgaaccattgaagtactactagtgctgatttttacacatacacaggtacactggat |
42630375 |
T |
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| Q |
116 |
tctataaaggaatacagagtgcgggggctgcagttgcatggcaaattgataaccataacgtgtctccaatggcacagttgattgtgaattgggtactaac |
215 |
Q |
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| T |
42630374 |
tctataaaggaatacagagtgcgggggctgcagttgcatggcaaattgataaccataacgtgtctccaatggcacagttgattgtcaattgggtactaac |
42630275 |
T |
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| Q |
216 |
tacattaagctatcccttattgttagttttgatggttttggctgtgaaagagaacaatgaggaagtggaggaacctgtgaaacaagttgctcc |
308 |
Q |
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| T |
42630274 |
tacattaagctatcccttattgttagttttgatggttttggctgtgaaagagagcaatgaggaagtggaggaacctgtcaaacaagttgctcc |
42630182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 98 - 273
Target Start/End: Complemental strand, 42637278 - 42637103
Alignment:
| Q |
98 |
tacacaggtacactggattctataaaggaatacagagtgcgggggctgcagttgcatggcaaattgataaccataacgtgtctccaatggcacagttgat |
197 |
Q |
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| T |
42637278 |
tacacaggtatacagggttctataaagggatacagagtgcgggggctgcagttgcatggcaaattgataaccacaatgtatctccaatgacacagttgat |
42637179 |
T |
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| Q |
198 |
tgtgaattgggtactaactacattaagctatcccttattgttagttttgatggttttggctgtgaaagagaacaat |
273 |
Q |
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| T |
42637178 |
tgtgaattgggtgctcactacactaagctatccgttattgttggttttaatgattttggttgtgaaagaggacaat |
42637103 |
T |
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