View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6540_low_46 (Length: 285)
Name: NF6540_low_46
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_46 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 14 - 285
Target Start/End: Complemental strand, 11138025 - 11137753
Alignment:
| Q |
14 |
atatcggaaaccacgtattaaagacatgtttggctggaccaccaatactctacaaaaagcacatcctcaatgttacaataatgatatccatacaatccta |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11138025 |
atatcggaaaccacgtattaaagacatgtttggctggaccaccaatactctacaaaaagcacatcctcaatgttacaataatgatatccatacaagccta |
11137926 |
T |
|
| Q |
114 |
cattcgtataatatatacaatcaaatatgttaatagtatttgttgtgaagaagtgggatc-ttgattggggacatgttcctatcataatttattcatttc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11137925 |
cattcgtataatatatacaatcaaatatgttaatagtatttgttgtgaagaagtgggatctttgattggggacatgttcctatcataatttattcatttc |
11137826 |
T |
|
| Q |
213 |
atgtgtacttgaacatgaaaaccacgtctacctacgttatcagcacactacaatttattcaatgtctacgtaa |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11137825 |
atgtgtacttgaacatgaaaaccacgtctacctacgttatcagcacactacaatttattcaatgtctacgtaa |
11137753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University