View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_48 (Length: 263)
Name: NF6540_low_48
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 17232161 - 17231923
Alignment:
| Q |
18 |
tattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatcataaagattaaat |
117 |
Q |
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| T |
17232161 |
tattcaaaagtataaaaagtcataccacatacatgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatcataaagattaaat |
17232062 |
T |
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| Q |
118 |
tcaatgagcacctttagattaaaacctttgtcaacaaggaggttttcggacgtcaaaatccctatgaactatcataggagtttctagttatgatcttaat |
217 |
Q |
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||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
17232061 |
tcaatgagcacctttagataaaaacttttgtcaaccaggaggtttttggacgtcaaaatccctatgaactatcataggagtttctaattatgatcttaat |
17231962 |
T |
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| Q |
218 |
tccatagcagcatagatgtttaatgtaataggtgaaaac |
256 |
Q |
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| T |
17231961 |
tccatagcagcatagatgtttaatgtaataagtgaaaac |
17231923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 1251061 - 1250904
Alignment:
| Q |
18 |
tattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatcataaagattaaat |
117 |
Q |
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| T |
1251061 |
tattcataagtaaaaaaagtcataccacatacatgaacaattcaaatagtataaccaccatgt--------ggaacattaattaatcataaagattaaat |
1250970 |
T |
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| Q |
118 |
tcaatgagcacctttagattaaaacctttgtcaacaaggaggttttcggacgtcaaaatccctatgaa |
185 |
Q |
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| T |
1250969 |
tcaatgagcaattttacattaacgtttctatcaacaaggaggtttttggacgtc--aatccctatgaa |
1250904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 38947892 - 38947955
Alignment:
| Q |
41 |
accacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatc |
104 |
Q |
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|||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
38947892 |
accacatacatgaacttgtcaaatagtataatcaccatgtgctatcaaggaacattaattaatc |
38947955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 38946442 - 38946556
Alignment:
| Q |
18 |
tattcaaaagtataaaaagtcataccacatacacgaacacgtcaaatagtataaccaccatgtgctatcaaggaacattaatgaatcataaagattaaat |
117 |
Q |
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|||||||||||| |||||||||||||| ||||| ||||| ||||||||||||| || |||| ||||| || || |||| ||||| |||||||||| |
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| T |
38946442 |
tattcaaaagtaaaaaaagtcataccatatacatgaacagttcaaatagtataatcatcatgaactatcgcagagcaataattaatca-caagattaaat |
38946540 |
T |
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| Q |
118 |
tcaatgagcaccttta |
133 |
Q |
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||||||| |||||||| |
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| T |
38946541 |
tcaatgaacaccttta |
38946556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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