View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_5 (Length: 558)
Name: NF6540_low_5
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 11 - 540
Target Start/End: Complemental strand, 53810816 - 53810288
Alignment:
| Q |
11 |
ttatactcctatgtgtgatttttattgtattcataatattatttgcaatgaaacgagtaacttggtttgagtgaaaataagataacttgatctagacttt |
110 |
Q |
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| T |
53810816 |
ttatactcctatgtgtgatttttattgtattcataatattatttgcaatgaaacgagtaacttggtttgagtgaaaataagataacttgatctagacttt |
53810717 |
T |
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| Q |
111 |
ttcttctaatatatataaaaaacttaatctagactaaatggaccaccaaaaggccaacagccctgggtctnnnnnnnttagtgtccaaattctctgcctt |
210 |
Q |
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| T |
53810716 |
ttcttttaatatatataaaaaacttaatctagactaa-tggaccaccaaaaggccaacagccctgggtctaaaaaaattagtgtccaaattctctgcctt |
53810618 |
T |
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| Q |
211 |
tttatcatatgggtacgtatgagtgaaagctatcaagattcaagtcacatacttttgtcatgtttttgtagggcagtggtgtttggtattataggttatc |
310 |
Q |
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| T |
53810617 |
tttatcatatggatacgtatgagtgaaagctatcaagattcaagtcacatacttttgtcatgtttttgtagggcagtggtgtttggtattataggttatc |
53810518 |
T |
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| Q |
311 |
tacaaatttatggcataactctgcgtttatatgcttattaaggaatcaaaatagatgaagacttctcgtaaattaggatattgcaggatagcaagaactt |
410 |
Q |
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| T |
53810517 |
tgcaaattcatggcataactctgcgtttatatgcttattacggaatcaaaatagatgaagacttctcgtaaattaggatattgcaggatagcaagaactt |
53810418 |
T |
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| Q |
411 |
tttctattttattccacctcataaaaagaacataaccactagaaaaagatggaactacatataaagaggaaaggcatggtacattaacatataacagaca |
510 |
Q |
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| T |
53810417 |
tttctattttattccacctcataaaaagaacataaccactagaaaaagatggaactacatataaagaggaaaagcatggtacattaacatataacagaca |
53810318 |
T |
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| Q |
511 |
actctgtgagttggaattccacccaaaacc |
540 |
Q |
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| T |
53810317 |
actctgtgagttggaattccacccaaaacc |
53810288 |
T |
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