View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_52 (Length: 251)
Name: NF6540_low_52
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_52 |
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| [»] chr6 (6 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0256 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 16579672 - 16579431
Alignment:
| Q |
10 |
aagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagca |
109 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16579672 |
aagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagca |
16579573 |
T |
|
| Q |
110 |
gaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16579572 |
gaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttt |
16579473 |
T |
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| Q |
210 |
tcttccttcccctaactgccacaagccatttgaacttcttgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
16579472 |
tcttccttcccctaactgccacaagccatttgaacttcttgt |
16579431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 10 - 251
Target Start/End: Original strand, 16615708 - 16615949
Alignment:
| Q |
10 |
aagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagca |
109 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16615708 |
aagaatatcgagaatgaccaacatattatgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagca |
16615807 |
T |
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| Q |
110 |
gaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16615808 |
gaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttt |
16615907 |
T |
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| Q |
210 |
tcttccttcccctaactgccacaagccatttgaacttcttgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
16615908 |
tcttccttcccctaactgccacaagccatttgaacttcttgt |
16615949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 16872991 - 16872750
Alignment:
| Q |
10 |
aagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16872991 |
aagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagca |
16872892 |
T |
|
| Q |
110 |
gaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttt |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16872891 |
gaaaccacactaaaaagaatttgaagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcaattt |
16872792 |
T |
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| Q |
210 |
tcttccttcccctaactgccacaagccatttgaacttcttgt |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
16872791 |
tcttccttcccctaactgccacaagccatttgaacttcttgt |
16872750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 16571094 - 16571001
Alignment:
| Q |
11 |
agaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactga |
106 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
16571094 |
agaatatcgagaatgaccaaaatattctgcacacattttttccacaca--tataagcacatgcccaccaacgaggcttgaattaacatcaaactga |
16571001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 107 - 251
Target Start/End: Complemental strand, 16570976 - 16570836
Alignment:
| Q |
107 |
gcagaaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcag |
206 |
Q |
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||||||||||||||||||||||||||||||| || ||||||| || | ||||||||||||| ||||||||| || |||||||||||||||||| ||| |
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| T |
16570976 |
gcagaaaccacactaaaaagaatttgcagcttttatgcaggtattat-agccaattttgataggtaggtaac---tgttcaacttgttcaaaccttccag |
16570881 |
T |
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| Q |
207 |
ttttcttccttcccctaactgccacaagccatttgaacttcttgt |
251 |
Q |
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|||| ||||||| |||| | |||||||| |||||||||||||| |
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| T |
16570880 |
ttttattccttctcctagccgccacaagatctttgaacttcttgt |
16570836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 17040306 - 17040400
Alignment:
| Q |
155 |
agccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagttttcttccttcccctaactgccacaagccatttgaacttcttgt |
251 |
Q |
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||||||||| | | |||||||||| ||| |||||||| |||| |||| ||| |||||||||||||||| | ||||||||| |||||||||||||| |
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| T |
17040306 |
agccaatttagctaggtaggtaagctgt--tcaacttgctcaagccttccagatttcttccttcccctagccgccacaagctgtttgaacttcttgt |
17040400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 32791140 - 32790903
Alignment:
| Q |
11 |
agaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcag |
110 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| |
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| T |
32791140 |
agaatatcaagaatgaccaacatattctgcacacattttttccacacatttataggcaaatgccccccaatgaggcttggattaacatcaaactgagcaa |
32791041 |
T |
|
| Q |
111 |
aaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagtttt |
210 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||| ||| |||||||||||||||||| ||||||| |
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| T |
32791040 |
aaaccacactaaaaagaatttgcagcttttgtgcaggtgtttt-agccaattttgttaggtaggtaagctgt--tcaacttgttcaaaccttccagtttt |
32790944 |
T |
|
| Q |
211 |
cttccttcccctaactgccacaagccatttgaacttcttgt |
251 |
Q |
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|
|||||||||||| ||||||||||| |||||||||||||| |
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| T |
32790943 |
attccttcccctagctgccacaagctctttgaacttcttgt |
32790903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 236496 - 236635
Alignment:
| Q |
11 |
agaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcag |
110 |
Q |
| |
|
||||| ||||| ||||||| ||| ||||||||||| ||||||||||||||||| ||||||||||||| |||| | || |||||||||||||||||||| |
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| T |
236496 |
agaatgtcgaggatgaccagcatgttctgcacacactttttccacacatttatgggcatatgcccac---tgagtcctggattaacatcaaactgagcag |
236592 |
T |
|
| Q |
111 |
aaaccacactaaaaagaatttgcagctcttgtgcaggtgtttt |
153 |
Q |
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|||||||||| |||||||||||||||| || ||||||||||| |
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|
| T |
236593 |
aaaccacactgaaaagaatttgcagcttctgagcaggtgtttt |
236635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 48300922 - 48301061
Alignment:
| Q |
11 |
agaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcag |
110 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || ||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||| |
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| T |
48300922 |
agaatatcaagaatgaccagcatattctgcacgcactttttccacacatttatgggcatatgcccac---tgaggccaggattaacatcaaactgagcag |
48301018 |
T |
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| Q |
111 |
aaaccacactaaaaagaatttgcagctcttgtgcaggtgtttt |
153 |
Q |
| |
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|||||||||| |||||||||||||||| |||||||||||||| |
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| T |
48301019 |
aaaccacactgaaaagaatttgcagcttctgtgcaggtgtttt |
48301061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 7389309 - 7389075
Alignment:
| Q |
11 |
agaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgagcag |
110 |
Q |
| |
|
||||| ||||||||||||| ||| ||||||||||| |||||||||||| |||| |||||||| |||| |||||| || |||||||||||||||||||| |
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| T |
7389309 |
agaatgtcgagaatgaccagcatgttctgcacacactttttccacacacttatgggcatatggccac---tgaggcctggattaacatcaaactgagcag |
7389213 |
T |
|
| Q |
111 |
aaaccacactaaaaagaatttgcagctcttgtgcaggtgttttcagccaattttgattggtaggtaagatgtgatcaacttgttcaaacctttcagtttt |
210 |
Q |
| |
|
|||||||||| |||||||||||||||| || ||||||||||| ||| | ||||| | || ||||||| || ||||| |||||||||||| ||||| |
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| T |
7389212 |
aaaccacactgaaaagaatttgcagcttctgagcaggtgtttt-agcaacttttgttaggaaggtaag--ctgctcaacctgttcaaaccttccagttcc |
7389116 |
T |
|
| Q |
211 |
cttccttcccctaactgccacaagccatttgaacttcttgt |
251 |
Q |
| |
|
|||||| ||||| || ||| || | |||||||||||||| |
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|
| T |
7389115 |
cttcctgcccctggcttccagaatctctttgaacttcttgt |
7389075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 129
Target Start/End: Original strand, 14979 - 15100
Alignment:
| Q |
8 |
cgaagaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaattaacatcaaactgag |
107 |
Q |
| |
|
|||||||||| ||||||||| | || |||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14979 |
cgaagaatattgagaatgacaatcaaattctgcacaaattttttccacatatttatatgcatatgcccaccaatgaggcttggattaacatcaaactgag |
15078 |
T |
|
| Q |
108 |
cagaaaccacactaaaaagaat |
129 |
Q |
| |
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| |||||||| || |||||||| |
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|
| T |
15079 |
cggaaaccactctgaaaagaat |
15100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 12612 - 12692
Alignment:
| Q |
11 |
agaatatcgagaatgaccaacatattctgcacacattttttccacacatttataggcatatgcccaccaatgaggcttgaa |
91 |
Q |
| |
|
|||||||| ||||| ||||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12612 |
agaatatctagaattaccaaaatattctgctcacattttttccacacatttataagcatatgcccaccaatgaggcttgaa |
12692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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