View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6540_low_53 (Length: 251)
Name: NF6540_low_53
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 9147853 - 9147789
Alignment:
| Q |
179 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9147853 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
9147789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Original strand, 34575512 - 34575599
Alignment:
| Q |
3 |
taatagtttattgtaataagaattaagttattgtaaatttattatgaaactattgatcaattaataaaaatgttgaattattgagaat |
90 |
Q |
| |
|
||||| |||| ||||||||| |||| || ||||||| | ||||||| |||||||||||||||||||| |||| ||||| ||||||| |
|
|
| T |
34575512 |
taataatttagtgtaataagcattattataatgtaaatgttttatgaagctattgatcaattaataaaagtgttaaattactgagaat |
34575599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 46966414 - 46966374
Alignment:
| Q |
52 |
ctattgatcaattaataaaaatgttgaattattgagaattt |
92 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||| |
|
|
| T |
46966414 |
ctattaatcaattaataaaagtgttaaattattgagaattt |
46966374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 5312298 - 5312362
Alignment:
| Q |
179 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5312298 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
5312362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 54753634 - 54753698
Alignment:
| Q |
179 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54753634 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
54753698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 53346483 - 53346423
Alignment:
| Q |
183 |
gttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53346483 |
gttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
53346423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 26256267 - 26256405
Alignment:
| Q |
9 |
tttattgtaataagaattaagttattgtaaatttattatgaaactattgatcaattaataaaaatgttgaattattgagaatttacatcatgcctcttta |
108 |
Q |
| |
|
|||||||||||||| |||| |||| ||||||| | |||||||||||| ||||| |||||| || |||| ||||||||||||||| |||||| ||||||| |
|
|
| T |
26256267 |
tttattgtaataagcattatgttaatgtaaatgtgttatgaaactatcgatcagttaatataagtgttaaattattgagaatttgtatcatgtctcttta |
26256366 |
T |
|
| Q |
109 |
catttatgttattt-ttcat-tttaaattatgtcatttt |
145 |
Q |
| |
|
|||||||||| ||| ||| | ||| |||||||||||||| |
|
|
| T |
26256367 |
catttatgttttttcttcttctttcaattatgtcatttt |
26256405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 29516536 - 29516476
Alignment:
| Q |
183 |
gttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
243 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29516536 |
gttggatttaatcaaatgtttagattagttgaaaataaaattaagaatatgtgttcatttc |
29516476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 35425018 - 35425082
Alignment:
| Q |
179 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaagaatatgtgttcatttc |
243 |
Q |
| |
|
|||||||||||||||| ||||||| | || | ||||||||||||||||||| ||||||||||||| |
|
|
| T |
35425018 |
taacgttggatttaattaaaggttcaaatgatttgaaaataaaattaagaacatgtgttcatttc |
35425082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 34341949 - 34342092
Alignment:
| Q |
1 |
tttaatagtttattgtaataagaattaagttattgtaaatttattatgaaactattgatcaattaataaaa-atgttgaattattgagaatttacatcat |
99 |
Q |
| |
|
||||||| |||||| ||||||| |||| || ||||||| || ||||||| |||| |||||||||||||| |||| ||||||| ||||||||||| | |
|
|
| T |
34341949 |
tttaataatttattataataagcattattgtaatgtaaatgtactatgaaagtattaatcaattaataaaatgtgttaaattattaagaatttacatttt |
34342048 |
T |
|
| Q |
100 |
gcctctttacatt-tatgttatttttcattttaaattatgtcat |
142 |
Q |
| |
|
| ||||||||||| | | || ||| ||||||| ||||||||||| |
|
|
| T |
34342049 |
gtctctttacattattttttttttgtcattttcaattatgtcat |
34342092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 226
Target Start/End: Complemental strand, 23458615 - 23458569
Alignment:
| Q |
179 |
taacgttggatttaatcaaaggtttagattagttgaaaataaaattaa |
226 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||| |||||||||||| |
|
|
| T |
23458615 |
taacgttggatttaattaaaggtttaaattagttg-aaataaaattaa |
23458569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 52593191 - 52593133
Alignment:
| Q |
29 |
gttattgtaaatttattatgaaactattgatcaattaataaaa-atgttgaattattga |
86 |
Q |
| |
|
|||| ||||||| || ||||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
52593191 |
gttaatgtaaatataatatgaaagtattgatcaattaataaaacatgttaaattattga |
52593133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Complemental strand, 7492004 - 7491944
Alignment:
| Q |
11 |
tattgtaataagaattaagttattgtaaatttattatgaaactattgatcaattaataaaa |
71 |
Q |
| |
|
|||||||||||| ||| |||| ||||||| || || |||| ||||||||||||||||||| |
|
|
| T |
7492004 |
tattgtaataaggtttatgttaatgtaaatgtactacgaaaatattgatcaattaataaaa |
7491944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University