View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_low_54 (Length: 249)

Name: NF6540_low_54
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_low_54
NF6540_low_54
[»] chr5 (19 HSPs)
chr5 (19-212)||(30061156-30061349)
chr5 (19-212)||(30750430-30750623)
chr5 (23-212)||(30337654-30337843)
chr5 (23-212)||(30676417-30676606)
chr5 (24-212)||(30436602-30436790)
chr5 (23-212)||(30712557-30712746)
chr5 (23-212)||(30484189-30484378)
chr5 (24-212)||(29854100-29854288)
chr5 (23-212)||(29872962-29873151)
chr5 (23-211)||(30400862-30401050)
chr5 (24-210)||(30207311-30207497)
chr5 (19-212)||(30241510-30241703)
chr5 (45-212)||(30476185-30476352)
chr5 (44-212)||(30520754-30520922)
chr5 (44-212)||(30561094-30561262)
chr5 (134-212)||(30330338-30330416)
chr5 (38-89)||(15331888-15331939)
chr5 (149-212)||(17417722-17417785)
chr5 (44-106)||(17417828-17417890)
[»] chr7 (1 HSPs)
chr7 (24-212)||(26708121-26708309)
[»] chr4 (2 HSPs)
chr4 (23-212)||(20295711-20295900)
chr4 (43-212)||(52352767-52352936)
[»] chr3 (1 HSPs)
chr3 (24-212)||(25293076-25293264)
[»] chr1 (2 HSPs)
chr1 (152-212)||(7100338-7100398)
chr1 (152-212)||(7580848-7580908)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 30061156 - 30061349
Alignment:
Q  19 ccctgattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagca 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  30061156 ccctgattccaattgttgattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctctctttccattacagca 30061255  T
Q  119 tactcaaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    || |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30061256 taatcaaagtcaggacacttctgtaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 30061349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 30750430 - 30750623
Alignment:
Q  19 ccctgattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagca 118  Q
    ||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30750430 ccctgattccaattgttcattttgattccatacatcatccaaaaccaacaaatatcttttcccttgcaacaatccttgcacctttctttccattacagca 30750529  T
Q  119 tactcaaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30750530 tactcaaagtcaggacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 30750623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 30337843 - 30337654
Alignment:
Q  23 gattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatact 122  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| |    
T  30337843 gattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttccttccattacagcataat 30337744  T
Q  123 caaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30337743 caaagtcaggacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 30337654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 30676606 - 30676417
Alignment:
Q  23 gattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatact 122  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  30676606 gattccaattgttcattttgattccacacatcatccaaaaccagcaaatatcttttcccttgcaacaatccttgcacctttccttccattacagcatact 30676507  T
Q  123 caaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  30676506 caaagtcaggacacttctctaatgtgatagattcgaaaatagaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 30676417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 30436602 - 30436790
Alignment:
Q  24 attccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactc 123  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |  | ||    
T  30436602 attccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaaatc 30436701  T
Q  124 aaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  30436702 aaagtcagcacacttctctcttgtgatagattctataatagaacacaaaatccttttgaccgagaaagtctcagaaacacaaacccaaa 30436790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 30712746 - 30712557
Alignment:
Q  23 gattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatact 122  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||||| |||||||||||  ||| |  |||    
T  30712746 gattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcagctttctttccaagacatctaact 30712647  T
Q  123 caaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  30712646 caaagtcaggacacttctctaatgtaatagattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 30712557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 30484189 - 30484378
Alignment:
Q  23 gattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatact 122  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| |||||| ||||||||||||||||||||||  ||| |  |||    
T  30484189 gattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttccgttgcaacaatccttgcacctttctttccaagacatctaact 30484288  T
Q  123 caaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||  ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  30484289 caaagtcatgacacttctctaatgtaatagattctataatacaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 30484378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 29854100 - 29854288
Alignment:
Q  24 attccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactc 123  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||| |||||||| ||||||||| |||| |  | ||    
T  29854100 attccaattgttgattttgattccacacatcatccaaaaccagcaaatatattttaccttgcaacaattcttgcacccttctttccaatacatctaaatc 29854199  T
Q  124 aaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    |||||||| | ||||||||  |||||||||||||| ||||||||||||||| ||||| || |||||||| |||||||| ||||||||||    
T  29854200 aaagtcagcagacttctctcttgtgatagattctacaatagaacacaaaattctcttgactgagaaagtttcagaaacgcaaacccaaa 29854288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 29872962 - 29873151
Alignment:
Q  23 gattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatact 122  Q
    ||||||||||||||  |||  ||||||| |||||| ||||| ||||||||| |||| |||||||  | | ||||||||||||||||||||||| |  | |    
T  29872962 gattccaattgttgggttttgttccacagatcatccaaaacgagcaaatattttttaccttgcagcacttcttgcacctttctttccattacatctaatt 29873061  T
Q  123 caaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    | ||||||| ||||||||||  |||||||||||||||||| |||||  |||||||||| || ||||||||||||||||||||||||||||    
T  29873062 cgaagtcagcacacttctctcttgtgatagattctataatggaacaacaaatcctcttgacagagaaagtctcagaaacacaaacccaaa 29873151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 23 - 211
Target Start/End: Original strand, 30400862 - 30401050
Alignment:
Q  23 gattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatact 122  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||||||||| || |||||||||| ||| |||||||||||||||  |||||| |  | |    
T  30400862 gattccaattgttcattttgattccacacatcatccaaaatcagcaaatatattctcccttgcaacaattcttgcacctttctttgtattacatctgaat 30400961  T
Q  123 caaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaa 211  Q
    | ||| ||  |||  |||||  ||| ||| |||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
T  30400962 ccaaggcatcacatatctctcctgtaatatattctataatagaacacaaaatcctcttgacagagaaagtctcggaaacacaaacccaa 30401050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 210
Target Start/End: Original strand, 30207311 - 30207497
Alignment:
Q  24 attccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactc 123  Q
    |||||||||| |||||||  |||||||||||||| |||| |||||||||| |||| |||||||  ||| | |||||||||||||  |||||| |  | |     
T  30207311 attccaattgctgatttttgttccacacatcatccaaaatcagcaaatatattttaccttgcagcaattcctgcacctttctttgtattacatctaaatt 30207410  T
Q  124 aaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaaccca 210  Q
     ||| |   | ||||||||  |||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||||||||    
T  30207411 gaagccgtcatacttctctcttgtgatagattctataatggagcacaaaatcctcttgaccgagaaagtctcggaaacacaaaccca 30207497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 30241703 - 30241510
Alignment:
Q  19 ccctgattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagca 118  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||| ||||| || ||| | ||||||||| | |   |||||       
T  30241703 ccctgattccaattgttcattttgattccacacatcatccaaaactagcaaatatattttaccttgtaacaattcctgcacctttttctgtgttacattt 30241604  T
Q  119 tactcaaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
     | |||||| ||  | |||||| |  ||||||| ||| |||||| |||||||||||||| || || |||||| |||||||||||||||||||||    
T  30241603 aaatcaaagccatcatacttcttttctgtgataaattgtataatggaacacaaaatcctgttgacagagaaattctcagaaacacaaacccaaa 30241510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 212
Target Start/End: Original strand, 30476185 - 30476352
Alignment:
Q  45 tccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactcaaagtcagaacacttctctaa 144  Q
    |||| |||||||| |||||||||||| ||||||| |||||||||| | || |  | |||||||  |||||| |  | || ||| ||  | |||| |||      
T  30476185 tccatacatcatccaaaaccagcaaaaatcttttaccttgcaatagttctcgtgcttttctttgtattacatctaaatccaaggcatcaaacttgtcttt 30476284  T
Q  145 tgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    |||||||||||||||||| |||||||||||||| || || ||||||||||| |||||||||| |||||    
T  30476285 tgtgatagattctataatggaacacaaaatccttttgacagagaaagtctccgaaacacaaatccaaa 30476352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 30520922 - 30520754
Alignment:
Q  44 ttccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactcaaagtcagaacacttctcta 143  Q
    |||||||||||||| ||||| |||||||||||||| |||| ||| ||| ||||||| | || ||  || ||| |  | || ||| ||  |||||| |||     
T  30520922 ttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcacttgtcgttgtataacatctaaatctaaggcatcacacttttctc 30520823  T
Q  144 atgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
     ||  | |||||||||||||| |||||||||  | || || ||||||| ||||||||||||||||||||    
T  30520822 ttgaaaaagattctataatagtacacaaaattttgttaacagagaaagcctcagaaacacaaacccaaa 30520754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 30561262 - 30561094
Alignment:
Q  44 ttccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactcaaagtcagaacacttctcta 143  Q
    |||||||||||||| ||||| |||||||||||||| |||| ||| ||| ||||||| | || ||  || ||| |  | || ||| ||  |||||| |||     
T  30561262 ttccacacatcatccaaaacaagcaaatatcttttaccttccaacaattcttgcacttgtcgttgtataacatctaaatctaaggcatcacacttttctc 30561163  T
Q  144 atgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
     ||  | |||||||||||||| |||||||||  | || || ||||||| ||||||||||||||||||||    
T  30561162 ttgaaaaagattctataatagtacacaaaattttgttaacagagaaagcctcagaaacacaaacccaaa 30561094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 134 - 212
Target Start/End: Complemental strand, 30330416 - 30330338
Alignment:
Q  134 cacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    |||||||||  | |||||| ||||||||||||||||| |||||| || |  |||||||||||| | |||||||||||||    
T  30330416 cacttctctcttatgataggttctataatagaacacacaatcctattgagagagaaagtctcatatacacaaacccaaa 30330338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 89
Target Start/End: Original strand, 15331888 - 15331939
Alignment:
Q  38 ttttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaata 89  Q
    |||| ||||||||||||||||||||| ||||||||| |||| | ||||||||    
T  15331888 ttttcattccacacatcatctaaaacaagcaaatatttttttctttgcaata 15331939  T

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Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 17417785 - 17417722
Alignment:
Q  149 atagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||||| || ||||||||||||||||| |  |||||||  ||||||||||||| |||||    
T  17417785 atagattctatgatggaacacaaaatcctcttgattgagaaagcatcagaaacacaaatccaaa 17417722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 106
Target Start/End: Complemental strand, 17417890 - 17417828
Alignment:
Q  44 ttccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctt 106  Q
    ||||||||||| || |||||||| ||||||||||| |||| ||||| | ||| ||||||||||    
T  17417890 ttccacacatcgtccaaaaccagaaaatatcttttacctttcaatagttctttcacctttctt 17417828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 212
Target Start/End: Original strand, 26708121 - 26708309
Alignment:
Q  24 attccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactc 123  Q
    |||||||||||| ||||||||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |  ||||    
T  26708121 attccaattgttcattttgattccacacatcatccaaaatcagcaaatatattttcccttgcaacaatccttgcacctttctttccattacatctaactc 26708220  T
Q  124 aaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  26708221 aaagtcaggacacttctctaatgtgatagattctataatagaacacaaaatcctcttgactgagaaagtctcagaaacacaaacccaaa 26708309  T

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Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 20295900 - 20295711
Alignment:
Q  23 gattccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatact 122  Q
    ||||||||||| | |||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||| |||  |  | |    
T  20295900 gattccaattgatcattttgattccacacatcatctaaaatcaacaaatatattttcccttgcaacaatccttgcacctttctttccaatacgtctaagt 20295801  T
Q  123 caaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||  |  ||||||||||||||||||||||||||||    
T  20295800 caaagtcaggacacttctctaatgtgatagattctataatagaacgcaaaatcctctcgaaggagaaagtctcagaaacacaaacccaaa 20295711  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 52352767 - 52352936
Alignment:
Q  43 attccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactcaaagtcagaacacttctct 142  Q
    ||||||||||||||| ||||||| |||||||||||| |||||||| ||| ||||| |  ||||||  || ||| |  | || ||| ||  |||||| |||    
T  52352767 attccacacatcatccaaaaccaacaaatatcttttaccttgcaacaattcttgcgctcttctttgtatcacatctaaatctaagccatcacacttttct 52352866  T
Q  143 aatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
      ||| |||||||||||||| |||||||||||||| || || ||||||  ||||||||||||||||||||    
T  52352867 cttgtaatagattctataatggaacacaaaatcctattgacagagaaatcctcagaaacacaaacccaaa 52352936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 24 - 212
Target Start/End: Complemental strand, 25293264 - 25293076
Alignment:
Q  24 attccaattgttgattttgattccacacatcatctaaaaccagcaaatatcttttcccttgcaataatccttgcacctttctttccattacagcatactc 123  Q
    |||||||||| |||||||  ||||||||||| || ||||  ||||||||| |||| |||||||||| | ||| |||||||||||  |||||| |  | ||    
T  25293264 attccaattgctgatttttgttccacacatcgtccaaaataagcaaatatattttaccttgcaatagttcttacacctttctttgtattacatctaaatc 25293165  T
Q  124 aaagtcagaacacttctctaatgtgatagattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    |||| ||  ||||||||||   ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  25293164 aaaggcatcacacttctctctagtgatagattctataatggaacacaaaatcctcttgaccgagaaagtctcagaaacacaaacccaaa 25293076  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 7100338 - 7100398
Alignment:
Q  152 gattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||||| ||||||||||||| ||| || ||||||  ||| ||||||||||||||||    
T  7100338 gattctataatggaacacaaaatccccttgactgagaaaacctctgaaacacaaacccaaa 7100398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 7580908 - 7580848
Alignment:
Q  152 gattctataatagaacacaaaatcctctttaccgagaaagtctcagaaacacaaacccaaa 212  Q
    ||||||||||| ||||||||||||| ||| ||||||||   ||| ||||||||||||||||    
T  7580908 gattctataatggaacacaaaatccccttgaccgagaatacctctgaaacacaaacccaaa 7580848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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