View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_low_55 (Length: 249)

Name: NF6540_low_55
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_low_55
NF6540_low_55
[»] chr2 (11 HSPs)
chr2 (1-239)||(32615754-32615989)
chr2 (1-50)||(41042024-41042073)
chr2 (1-49)||(34652038-34652086)
chr2 (2-50)||(41032958-41033006)
chr2 (1-49)||(41809247-41809295)
chr2 (1-36)||(1939334-1939369)
chr2 (1-36)||(10285893-10285928)
chr2 (6-39)||(3611367-3611400)
chr2 (8-49)||(16867759-16867800)
chr2 (1-49)||(787352-787400)
chr2 (1-49)||(9556259-9556307)
[»] scaffold0286 (1 HSPs)
scaffold0286 (1-47)||(16132-16178)
[»] chr6 (10 HSPs)
chr6 (1-47)||(2160939-2160985)
chr6 (1-49)||(17241254-17241302)
chr6 (1-41)||(31583707-31583747)
chr6 (1-35)||(5566179-5566213)
chr6 (1-36)||(9667987-9668022)
chr6 (1-36)||(27909640-27909675)
chr6 (1-39)||(34939774-34939812)
chr6 (3-36)||(2167162-2167195)
chr6 (3-36)||(2178795-2178828)
chr6 (1-49)||(6647407-6647455)
[»] chr5 (8 HSPs)
chr5 (4-39)||(29590634-29590669)
chr5 (1-41)||(35963269-35963309)
chr5 (1-42)||(15074751-15074792)
chr5 (8-49)||(33533548-33533589)
chr5 (1-37)||(1899186-1899222)
chr5 (2-38)||(2092548-2092584)
chr5 (4-36)||(31694551-31694583)
chr5 (9-49)||(38104867-38104907)
[»] chr3 (10 HSPs)
chr3 (1-36)||(29771871-29771906)
chr3 (1-36)||(37273167-37273202)
chr3 (1-36)||(21862177-21862212)
chr3 (1-47)||(11039341-11039387)
chr3 (1-34)||(36200131-36200164)
chr3 (3-39)||(26542567-26542603)
chr3 (1-33)||(37155037-37155069)
chr3 (1-33)||(37200392-37200424)
chr3 (1-37)||(41671342-41671378)
chr3 (1-41)||(42745066-42745106)
[»] chr8 (12 HSPs)
chr8 (1-39)||(25869268-25869306)
chr8 (3-39)||(28769343-28769379)
chr8 (1-49)||(30277247-30277295)
chr8 (1-36)||(3600740-3600775)
chr8 (1-36)||(14339607-14339642)
chr8 (8-39)||(38336060-38336091)
chr8 (4-49)||(8062349-8062394)
chr8 (1-34)||(11185256-11185289)
chr8 (1-34)||(12361227-12361260)
chr8 (2-39)||(40356955-40356992)
chr8 (1-41)||(13000426-13000466)
chr8 (67-127)||(26215427-26215487)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-38)||(10619-10656)
[»] chr7 (8 HSPs)
chr7 (1-42)||(33894654-33894695)
chr7 (1-36)||(24363603-24363638)
chr7 (1-39)||(27496409-27496447)
chr7 (1-39)||(27503067-27503105)
chr7 (1-33)||(3468650-3468682)
chr7 (3-35)||(39281003-39281035)
chr7 (1-41)||(44151482-44151522)
chr7 (1-33)||(45078314-45078346)
[»] chr1 (19 HSPs)
chr1 (2-39)||(11211148-11211185)
chr1 (1-49)||(28689454-28689502)
chr1 (1-36)||(35017609-35017644)
chr1 (2-41)||(39347970-39348009)
chr1 (1-39)||(3244929-3244967)
chr1 (1-35)||(12477289-12477323)
chr1 (1-39)||(15579512-15579550)
chr1 (2-36)||(33108625-33108659)
chr1 (3-37)||(35669004-35669038)
chr1 (1-39)||(35925720-35925758)
chr1 (1-42)||(11695888-11695929)
chr1 (1-34)||(17420238-17420271)
chr1 (53-130)||(33527212-33527289)
chr1 (1-37)||(2522661-2522697)
chr1 (1-37)||(4768831-4768867)
chr1 (1-41)||(4868428-4868468)
chr1 (1-49)||(6279419-6279467)
chr1 (64-128)||(25719464-25719528)
chr1 (1-41)||(47917264-47917304)
[»] chr4 (7 HSPs)
chr4 (1-49)||(29467626-29467674)
chr4 (1-39)||(7694012-7694050)
chr4 (1-39)||(39438540-39438578)
chr4 (3-36)||(5131254-5131287)
chr4 (1-33)||(20656073-20656105)
chr4 (2-42)||(43824310-43824350)
chr4 (1-41)||(55547046-55547086)
[»] scaffold0254 (1 HSPs)
scaffold0254 (3-36)||(3506-3539)
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-49)||(12706-12754)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 32615989 - 32615754
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagataaaacttatagaatttatgaaaatagttttactctattttatcatttgttgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  32615989 acatgtccataagttgttttcaacttatttccataaactttctaagataaaacttatagaatttatgaaaatagttttactttattttatcatttgttac 32615890  T
Q  101 agtactagcttatacatacgcgcttatgctagaagcacgttatatcatgtaatagtagat--tgcaagaaaaatattattataatatataacaatcatgt 198  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| | |||||||||||||||||||||    
T  32615889 agtaatagcttatacatacgcgcttatgctagaagcacgttatatcatgtaatagtagattgtgcaagaaaaatatcaatataatatataacaatcatgt 32615790  T
Q  199 caggctttgaattgcatcacatcacttacctgatacatttt 239  Q
    ||||||||||||||     ||||||||||||||||||||||    
T  32615789 caggctttgaattg-----catcacttacctgatacatttt 32615754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 41042024 - 41042073
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagataa 50  Q
    |||||||||| || ||||||||||||||||||||||||| || |||||||    
T  41042024 acatgtccatcagctgttttcaacttatttccataaactctccaagataa 41042073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 34652038 - 34652086
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    ||||||||||||| |||||||||||||||||||||| || || ||||||    
T  34652038 acatgtccataagctgttttcaacttatttccataagctctccaagata 34652086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 41032958 - 41033006
Alignment:
Q  2 catgtccataagttgttttcaacttatttccataaactttctaagataa 50  Q
    |||||| |||||||||||||| |||||||||||||||| | ||||||||    
T  41032958 catgtctataagttgttttcagcttatttccataaactctataagataa 41033006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 41809247 - 41809295
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||| ||||||||||||| | ||||||||||||| ||||||||||||    
T  41809247 acatgttcataagttgtttttagcttatttccataagctttctaagata 41809295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 1939334 - 1939369
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1939334 acatgtccataagctgttttcaacttatttccataa 1939369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10285928 - 10285893
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  10285928 acatgtccataagctgttttcaacttatttccataa 10285893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 39
Target Start/End: Complemental strand, 3611400 - 3611367
Alignment:
Q  6 tccataagttgttttcaacttatttccataaact 39  Q
    |||||||||||||||||||||||||||| |||||    
T  3611400 tccataagttgttttcaacttatttccacaaact 3611367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 16867800 - 16867759
Alignment:
Q  8 cataagttgttttcaacttatttccataaactttctaagata 49  Q
    ||||||||||||||||||||||||||||| || || ||||||    
T  16867800 cataagttgttttcaacttatttccataagctctccaagata 16867759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 787400 - 787352
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    ||||||||||||| |||||||| ||||| |||||||||  |||||||||    
T  787400 acatgtccataagctgttttcagcttatctccataaaccatctaagata 787352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9556307 - 9556259
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||||||||||| | ||||||||||||| ||||| ||||||| ||||    
T  9556307 acatgtccataagtagatttcaacttattttcataagctttctaggata 9556259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16178 - 16132
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaaga 47  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  16178 acatgtccataagttgttttcaacttatttccataatctttccaaga 16132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2160939 - 2160985
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaaga 47  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  2160939 acatgtccataagttgttttcaacttatttccataatctttccaaga 2160985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 17241254 - 17241302
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||| |||||||||||||||||||||||||||||||| || ||||||    
T  17241254 acatgttcataagttgttttcaacttatttccataaactctccaagata 17241302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31583747 - 31583707
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  31583747 acatgtccataagttgttttcaacttatttccataagcttt 31583707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5566179 - 5566213
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccata 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5566179 acatgtccataagttgttttcaacttatttccata 5566213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9667987 - 9668022
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    ||||||||||||| ||||||||||||||||||||||    
T  9667987 acatgtccataagctgttttcaacttatttccataa 9668022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27909640 - 27909675
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  27909640 acatgtccataagttgttttcagcttatttccataa 27909675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 34939812 - 34939774
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    |||||||||||| ||||||||| ||||||||||||||||    
T  34939812 acatgtccataaattgttttcagcttatttccataaact 34939774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 2167162 - 2167195
Alignment:
Q  3 atgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||| |||||||||||||    
T  2167162 atgtccataagttgttttcagcttatttccataa 2167195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 2178795 - 2178828
Alignment:
Q  3 atgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||| |||||||||||||    
T  2178795 atgtccataagttgttttcagcttatttccataa 2178828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6647455 - 6647407
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||| |||||| |||||||||||||||| ||||| || |||||||||    
T  6647455 acatgttcataagatgttttcaacttattttcataagctctctaagata 6647407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 39
Target Start/End: Original strand, 29590634 - 29590669
Alignment:
Q  4 tgtccataagttgttttcaacttatttccataaact 39  Q
    ||||||||||||||||||||||||||||||||||||    
T  29590634 tgtccataagttgttttcaacttatttccataaact 29590669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35963309 - 35963269
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  35963309 acatgtccataagttgttttcagcttatttccataagcttt 35963269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 15074751 - 15074792
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttc 42  Q
    ||||||||||||| |||||||| ||||||||||||| |||||    
T  15074751 acatgtccataagctgttttcagcttatttccataagctttc 15074792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 33533548 - 33533589
Alignment:
Q  8 cataagttgttttcaacttatttccataaactttctaagata 49  Q
    ||||||||||||||||||||||||||||| || || ||||||    
T  33533548 cataagttgttttcaacttatttccataagctctccaagata 33533589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1899222 - 1899186
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaa 37  Q
    |||||| ||||||||||||||| ||||||||||||||    
T  1899222 acatgtgcataagttgttttcagcttatttccataaa 1899186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 2092548 - 2092584
Alignment:
Q  2 catgtccataagttgttttcaacttatttccataaac 38  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  2092548 catgtccataagttgttttcaactttttttcataaac 2092584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 31694583 - 31694551
Alignment:
Q  4 tgtccataagttgttttcaacttatttccataa 36  Q
    ||||||||||||||||||||||||||| |||||    
T  31694583 tgtccataagttgttttcaacttattttcataa 31694551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 38104867 - 38104907
Alignment:
Q  9 ataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||||||||||| ||||||||||||| || |||||||||    
T  38104867 ataagttgttttcagcttatttccataagctctctaagata 38104907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29771906 - 29771871
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  29771906 acatgtccataagttgttttcaacttatttccataa 29771871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37273202 - 37273167
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  37273202 acatgtccataagttgttttcaacttatttccataa 37273167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 21862177 - 21862212
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  21862177 acatgtccataagttgttttcagcttatttccataa 21862212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 11039341 - 11039387
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaaga 47  Q
    |||||||||||||||||||||| ||||| ||||||| || |||||||    
T  11039341 acatgtccataagttgttttcagcttatctccataagctatctaaga 11039387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 36200164 - 36200131
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccat 34  Q
    |||||||||||||||||||||| |||||||||||    
T  36200164 acatgtccataagttgttttcagcttatttccat 36200131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 26542603 - 26542567
Alignment:
Q  3 atgtccataagttgttttcaacttatttccataaact 39  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  26542603 atgtctataacttgttttcaacttatttccataaact 26542567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37155069 - 37155037
Alignment:
Q  1 acatgtccataagttgttttcaacttatttcca 33  Q
    ||||||||||||||||||||| |||||||||||    
T  37155069 acatgtccataagttgttttctacttatttcca 37155037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37200424 - 37200392
Alignment:
Q  1 acatgtccataagttgttttcaacttatttcca 33  Q
    ||||||||||||||||||||| |||||||||||    
T  37200424 acatgtccataagttgttttctacttatttcca 37200392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41671378 - 41671342
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaa 37  Q
    ||||||| |||||||||||||||||||||| ||||||    
T  41671378 acatgtctataagttgttttcaacttattttcataaa 41671342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 42745106 - 42745066
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    |||||| ||||||||||||||| ||||||||||||| ||||    
T  42745106 acatgttcataagttgttttcatcttatttccataagcttt 42745066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 25869268 - 25869306
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  25869268 acatgtccataagttgttttcagcttatttccataaact 25869306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 28769343 - 28769379
Alignment:
Q  3 atgtccataagttgttttcaacttatttccataaact 39  Q
    |||||||||||||||||||| ||||||||||||||||    
T  28769343 atgtccataagttgttttcagcttatttccataaact 28769379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 30277247 - 30277295
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    ||||| |||||||||||||||| |||||||||||||||| |||| ||||    
T  30277247 acatggccataagttgttttcagcttatttccataaactctctaggata 30277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 3600740 - 3600775
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  3600740 acatgtccataagttgttttcaacttattttcataa 3600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14339607 - 14339642
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  14339607 acatgtccataagttgttttcaacttattttcataa 14339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 38336060 - 38336091
Alignment:
Q  8 cataagttgttttcaacttatttccataaact 39  Q
    ||||||||||||||||||||||||||||||||    
T  38336060 cataagttgttttcaacttatttccataaact 38336091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 8062394 - 8062349
Alignment:
Q  4 tgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||||||| |||||||| ||||||||||||| || |||||||||    
T  8062394 tgtccataagatgttttcagcttatttccataatctctctaagata 8062349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 11185289 - 11185256
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccat 34  Q
    |||||| |||||||||||||||||||||||||||    
T  11185289 acatgttcataagttgttttcaacttatttccat 11185256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 12361260 - 12361227
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccat 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  12361260 acatgtccataagctgttttcaacttatttccat 12361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 40356992 - 40356955
Alignment:
Q  2 catgtccataagttgttttcaacttatttccataaact 39  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  40356992 catgtccataagctgttttcaacatatttccataaact 40356955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 13000426 - 13000466
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    ||||||||| |||||||||||| ||||||||||||| ||||    
T  13000426 acatgtccacaagttgttttcagcttatttccataagcttt 13000466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 26215487 - 26215427
Alignment:
Q  67 gaaaatagttttactctattttatcatttgttgcagtactagcttatacatacgcgcttat 127  Q
    ||||||||||| ||| ||||||||| ||||||  || | ||||||||||||| ||||||||    
T  26215487 gaaaatagtttaactttattttatcttttgttatagaaatagcttatacataagcgcttat 26215427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 10619 - 10656
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaac 38  Q
    |||||||||||||||||||||| |||||||||||||||    
T  10619 acatgtccataagttgttttcagcttatttccataaac 10656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 33894695 - 33894654
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttc 42  Q
    |||||||||||||||||||||| |||||||| ||||||||||    
T  33894695 acatgtccataagttgttttcagcttatttcaataaactttc 33894654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 24363603 - 24363638
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||||| |||||||||||||    
T  24363603 acatgtccataagttgttttcagcttatttccataa 24363638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27496409 - 27496447
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  27496409 acatgtccataagctgttttcagcttatttccataaact 27496447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27503067 - 27503105
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  27503067 acatgtccataagctgttttcagcttatttccataaact 27503105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3468682 - 3468650
Alignment:
Q  1 acatgtccataagttgttttcaacttatttcca 33  Q
    ||||||||||||||||||| |||||||||||||    
T  3468682 acatgtccataagttgtttccaacttatttcca 3468650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 39281035 - 39281003
Alignment:
Q  3 atgtccataagttgttttcaacttatttccata 35  Q
    |||||||||||||||||||| ||||||||||||    
T  39281035 atgtccataagttgttttcagcttatttccata 39281003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44151482 - 44151522
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    ||||||||||||| |||||||| ||||||||||||| ||||    
T  44151482 acatgtccataagatgttttcagcttatttccataagcttt 44151522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45078346 - 45078314
Alignment:
Q  1 acatgtccataagttgttttcaacttatttcca 33  Q
    ||||||||||||| |||||||||||||||||||    
T  45078346 acatgtccataagctgttttcaacttatttcca 45078314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 11211185 - 11211148
Alignment:
Q  2 catgtccataagttgttttcaacttatttccataaact 39  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  11211185 catgtccataagttgtttttaacttatttccataaact 11211148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28689454 - 28689502
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||||||||||||||||||| ||||||| ||||| ||||| ||||||    
T  28689454 acatgtccataagttgttttcagcttattttcataagctttccaagata 28689502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 35017644 - 35017609
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataa 36  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35017644 acatgtccataagttattttcaacttatttccataa 35017609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 39347970 - 39348009
Alignment:
Q  2 catgtccataagttgttttcaacttatttccataaacttt 41  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  39347970 catgtccataagttgttttcagcttatttccataagcttt 39348009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3244967 - 3244929
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  3244967 acatgtccataagctattttcaacttatttccataaact 3244929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 12477289 - 12477323
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccata 35  Q
    |||||||||||||||||||||| ||||||||||||    
T  12477289 acatgtccataagttgttttcagcttatttccata 12477323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 15579550 - 15579512
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  15579550 acatgtccataagttgttctcagcttatttccataaact 15579512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Original strand, 33108625 - 33108659
Alignment:
Q  2 catgtccataagttgttttcaacttatttccataa 36  Q
    |||| ||||||||||||||||||||||||||||||    
T  33108625 catgaccataagttgttttcaacttatttccataa 33108659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 35669038 - 35669004
Alignment:
Q  3 atgtccataagttgttttcaacttatttccataaa 37  Q
    |||||||||| ||||||||||||||||||||||||    
T  35669038 atgtccataaattgttttcaacttatttccataaa 35669004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 35925758 - 35925720
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    |||||| |||||| |||||||||||||||||||||||||    
T  35925758 acatgttcataagctgttttcaacttatttccataaact 35925720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11695929 - 11695888
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttc 42  Q
    ||||||||||||| |||||||||||||||| ||||| |||||    
T  11695929 acatgtccataagctgttttcaacttattttcataagctttc 11695888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17420271 - 17420238
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccat 34  Q
    |||||||||||| |||||||||||||||||||||    
T  17420271 acatgtccataaattgttttcaacttatttccat 17420238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 33527212 - 33527289
Alignment:
Q  53 cttatagaatttatgaaaatagttttactctattttatcatttgttgcagtactagcttatacatacgcgcttatgct 130  Q
    |||||||| | |||||||| ||||| ||| ||||||||| ||||||  || | |||||||| |||| |||||||||||    
T  33527212 cttatagattatatgaaaacagtttgactgtattttatcttttgttttagaaatagcttattcataagcgcttatgct 33527289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2522697 - 2522661
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaa 37  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  2522697 acatgtccgtaatttgttttcaacttatttccataaa 2522661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4768831 - 4768867
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaa 37  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  4768831 acatgtccataacttgttttcagcttatttccataaa 4768867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4868468 - 4868428
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    ||||||| |||||||||||||||||||||| ||||| ||||    
T  4868468 acatgtcaataagttgttttcaacttatttacataagcttt 4868428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 6279467 - 6279419
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||||||||||||||||||| | ||||||||||| || |||| ||||    
T  6279467 acatgtccataagttgttttcagcgtatttccataagctctctaggata 6279419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 25719528 - 25719464
Alignment:
Q  64 tatgaaaatagttttactctattttatcatttgttgcagtactagcttatacatacgcgcttatg 128  Q
    |||||||||||||||||| ||||| ||| ||| || ||| | |||||||| ||||||| ||||||    
T  25719528 tatgaaaatagttttactttatttcatcttttattacagaaatagcttattcatacgcacttatg 25719464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 47917304 - 47917264
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    |||||| ||||||||||||||||||||||||  ||||||||    
T  47917304 acatgttcataagttgttttcaacttatttctttaaacttt 47917264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 29467626 - 29467674
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    ||||||||||||| |||||||| |||||||||||||||| |||| ||||    
T  29467626 acatgtccataagctgttttcagcttatttccataaactctctaggata 29467674  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7694012 - 7694050
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  7694012 acatgttcataagttgttttcagcttatttccataaact 7694050  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39438540 - 39438578
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaact 39  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  39438540 acatgtccataagttgttttcaacttattttcattaact 39438578  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 5131254 - 5131287
Alignment:
Q  3 atgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||| |||||||||||||    
T  5131254 atgtccataagttgttttcagcttatttccataa 5131287  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20656105 - 20656073
Alignment:
Q  1 acatgtccataagttgttttcaacttatttcca 33  Q
    ||||||||||||||||| |||||||||||||||    
T  20656105 acatgtccataagttgtcttcaacttatttcca 20656073  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 43824350 - 43824310
Alignment:
Q  2 catgtccataagttgttttcaacttatttccataaactttc 42  Q
    ||||| ||||||||||||||| ||||||||||||| |||||    
T  43824350 catgttcataagttgttttcagcttatttccataagctttc 43824310  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 55547046 - 55547086
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaacttt 41  Q
    ||||||| |||||||||||| | ||||||||||||||||||    
T  55547046 acatgtctataagttgtttttagcttatttccataaacttt 55547086  T

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Target: scaffold0254 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 3539 - 3506
Alignment:
Q  3 atgtccataagttgttttcaacttatttccataa 36  Q
    |||||||||||||||||||| |||||||||||||    
T  3539 atgtccataagttgttttcagcttatttccataa 3506  T

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Target: scaffold0147 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 12706 - 12754
Alignment:
Q  1 acatgtccataagttgttttcaacttatttccataaactttctaagata 49  Q
    |||||||||||||||||||||| ||||  ||||||| || |||||||||    
T  12706 acatgtccataagttgttttcagcttagctccataagctctctaagata 12754  T

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