View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_low_56 (Length: 248)

Name: NF6540_low_56
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_low_56
NF6540_low_56
[»] chr2 (6 HSPs)
chr2 (1-235)||(43443068-43443302)
chr2 (33-78)||(33954379-33954424)
chr2 (34-78)||(962593-962637)
chr2 (34-78)||(42514644-42514688)
chr2 (34-83)||(40733507-40733556)
chr2 (34-78)||(33561570-33561614)
[»] chr7 (4 HSPs)
chr7 (34-83)||(118420-118469)
chr7 (47-81)||(40230423-40230457)
chr7 (41-73)||(14681510-14681542)
chr7 (47-83)||(36622950-36622986)
[»] chr3 (5 HSPs)
chr3 (36-78)||(33809129-33809171)
chr3 (34-85)||(12114681-12114732)
chr3 (34-73)||(21832462-21832501)
chr3 (47-84)||(29645034-29645071)
chr3 (34-78)||(12747871-12747915)
[»] chr5 (6 HSPs)
chr5 (33-72)||(36522014-36522053)
chr5 (34-67)||(34753144-34753177)
chr5 (34-71)||(36527202-36527239)
chr5 (35-71)||(24489324-24489360)
chr5 (34-78)||(36568686-36568730)
chr5 (34-78)||(41632777-41632821)
[»] chr8 (4 HSPs)
chr8 (34-80)||(40518575-40518621)
chr8 (34-78)||(4154785-4154829)
chr8 (34-78)||(12283868-12283912)
chr8 (34-78)||(41972153-41972197)
[»] chr4 (1 HSPs)
chr4 (34-71)||(39792977-39793014)
[»] chr6 (1 HSPs)
chr6 (34-78)||(6071127-6071171)
[»] chr1 (2 HSPs)
chr1 (34-78)||(5320084-5320128)
chr1 (41-85)||(29798187-29798231)


Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 43443068 - 43443302
Alignment:
Q  1 atcgaggttaaaacaatcacataagcaagaaaaacttttctatctaatgtgggacatataacttacacttgcatacaataacaaagtgaaatattccttt 100  Q
    ||||| |||| |||||||||||||| |||| | | |||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||||||||||    
T  43443068 atcgaagttagaacaatcacataagtaagagatatttttctatctgatgtgggacatataacttacacttgcacacaacaataaagtgaaatattccttt 43443167  T
Q  101 gttttcaccgtgaaacatcttcaatagtataattttaacaaattataataactatacagtcacacaaatgctttatttgtcgtcttactaaatttggagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43443168 gttttcaccgtgaaacatcttcaatagtataattttaacaaattataataactatacagtcacacaaatgctttatttgtcgtcttactaaatttggagt 43443267  T
Q  201 taattctcatagtgttgttaattgtgttaactttg 235  Q
    |||||||| ||||||||||||||||||||||||||    
T  43443268 taattctcgtagtgttgttaattgtgttaactttg 43443302  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 33954379 - 33954424
Alignment:
Q  33 aacttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    ||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  33954379 aacttttctatctgatgtgggacatataactcacacttgcacacaa 33954424  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 962637 - 962593
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||  ||||||||||||||||| ||||||||||||||    
T  962637 acttttctatccgatgtgggacatataactcacacttgcatacaa 962593  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 42514688 - 42514644
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||| |||| |||||||||||| ||||||||||||||    
T  42514688 acttttctatctgatgtaggacatataactcacacttgcatacaa 42514644  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 40733556 - 40733507
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaataaca 83  Q
    |||||| ||||| ||||||||||||||||| ||||||| | |||||||||    
T  40733556 acttttttatctgatgtgggacatataactcacacttgtacacaataaca 40733507  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 33561570 - 33561614
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||| |||||| |||||||||| ||||||||| ||||    
T  33561570 acttttctatctgatgtggaacatataactcacacttgcacacaa 33561614  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 118420 - 118469
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaataaca 83  Q
    |||||||||||| ||||||||||||||||||||||||||| |||| ||||    
T  118420 acttttctatctgatgtgggacatataacttacacttgcacacaacaaca 118469  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 40230423 - 40230457
Alignment:
Q  47 atgtgggacatataacttacacttgcatacaataa 81  Q
    ||||||||||||||||||||||||||| |||||||    
T  40230423 atgtgggacatataacttacacttgcacacaataa 40230457  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 14681542 - 14681510
Alignment:
Q  41 tatctaatgtgggacatataacttacacttgca 73  Q
    ||||| |||||||||||||||||||||||||||    
T  14681542 tatctgatgtgggacatataacttacacttgca 14681510  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 36622986 - 36622950
Alignment:
Q  47 atgtgggacatataacttacacttgcatacaataaca 83  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  36622986 atgtgggacatataactcacacttgcacacaataaca 36622950  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 33809129 - 33809171
Alignment:
Q  36 ttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||| ||||||||||||||||||||||||||| ||||    
T  33809129 ttttctatctgatgtgggacatataacttacacttgcacacaa 33809171  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 12114681 - 12114732
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaataacaaa 85  Q
    |||||||||||  |||||||| |||||||||||||||||| |||| ||||||    
T  12114681 acttttctatccgatgtgggatatataacttacacttgcacacaacaacaaa 12114732  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 21832462 - 21832501
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgca 73  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  21832462 acttttctatccaatgtgggacatataactcacacttgca 21832501  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 29645034 - 29645071
Alignment:
Q  47 atgtgggacatataacttacacttgcatacaataacaa 84  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  29645034 atgtgggacatataacttacacttgcacacaacaacaa 29645071  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 12747871 - 12747915
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||  ||||||||||||||||| ||||||||| ||||    
T  12747871 acttttctatccgatgtgggacatataactcacacttgcacacaa 12747915  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 72
Target Start/End: Original strand, 36522014 - 36522053
Alignment:
Q  33 aacttttctatctaatgtgggacatataacttacacttgc 72  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  36522014 aacttttctatctgatgtgggacatataactcacacttgc 36522053  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 34753144 - 34753177
Alignment:
Q  34 acttttctatctaatgtgggacatataacttaca 67  Q
    ||||||||||| ||||||||||||||||||||||    
T  34753144 acttttctatccaatgtgggacatataacttaca 34753177  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 36527202 - 36527239
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttg 71  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  36527202 acttttctatctgatgtgggacatataactcacacttg 36527239  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 24489324 - 24489360
Alignment:
Q  35 cttttctatctaatgtgggacatataacttacacttg 71  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  24489324 cttttctatctgatgtgggacatataactcacacttg 24489360  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 36568686 - 36568730
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||  ||||||||||||||||| ||||||||| ||||    
T  36568686 acttttctatccgatgtgggacatataactcacacttgcacacaa 36568730  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 41632821 - 41632777
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||  ||||| ||||||||||||||||||||| ||||    
T  41632821 acttttctatccgatgtgagacatataacttacacttgcacacaa 41632777  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 40518621 - 40518575
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaata 80  Q
    |||||||||||| ||||||||||||||||| ||||||| | ||||||    
T  40518621 acttttctatctgatgtgggacatataactcacacttgaacacaata 40518575  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 4154785 - 4154829
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||  ||||||||||||||||| ||||||||| ||||    
T  4154785 acttttctatcagatgtgggacatataactcacacttgcacacaa 4154829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 12283912 - 12283868
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||| ||||| | ||||||||||||||||||||||||| ||||    
T  12283912 acttttttatctgacgtgggacatataacttacacttgcacacaa 12283868  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 41972197 - 41972153
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||  ||||||||||||||||| ||||||||| ||||    
T  41972197 acttttctatccgatgtgggacatataactcacacttgcacacaa 41972153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 39792977 - 39793014
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttg 71  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  39792977 acttttctatctgatgtgggacatataactcacacttg 39793014  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 6071171 - 6071127
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    ||||||||||  |||||||||||||||||| ||||||||| ||||    
T  6071171 acttttctattcaatgtgggacatataactcacacttgcacacaa 6071127  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 5320084 - 5320128
Alignment:
Q  34 acttttctatctaatgtgggacatataacttacacttgcatacaa 78  Q
    |||||||||||  |||||| |||||||||| ||||||||||||||    
T  5320084 acttttctatccgatgtggaacatataactcacacttgcatacaa 5320128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 29798231 - 29798187
Alignment:
Q  41 tatctaatgtgggacatataacttacacttgcatacaataacaaa 85  Q
    |||| ||||| |||||||||||| |||||||||||||| ||||||    
T  29798231 tatccaatgtaggacatataactcacacttgcatacaacaacaaa 29798187  T

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