View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_59 (Length: 243)
Name: NF6540_low_59
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_59 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 11 - 226
Target Start/End: Original strand, 33998542 - 33998757
Alignment:
| Q |
11 |
tcaaacaaaggaatgattcaaataacaaactcattcaaaatatataaaaactaattgatcactcagcaacagtggaaaaatgggtcaaaatctctaactc |
110 |
Q |
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| T |
33998542 |
tcaaacaaaggaatgattcaaataacaaactcattcaaaatatataaaacctaattcatcactcagcaacagtggaaaaatgggtcaaaatctctaactc |
33998641 |
T |
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| Q |
111 |
aacaatgagaatatctaaatccattgaaaacaacaataataaaccatgttaagtaacataaaatattagtaaaatgagaaattactattaattaaaatga |
210 |
Q |
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| T |
33998642 |
aacaatgggaatatccaaatccattgaaaacaacaataataaaccatgttaagtaacataaaatattagtaaaatgagaaattactattaattaaagtga |
33998741 |
T |
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| Q |
211 |
cattaatgactatttt |
226 |
Q |
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| T |
33998742 |
cattaatgactatttt |
33998757 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 8744524 - 8744486
Alignment:
| Q |
188 |
gaaattactattaattaaaatgacattaatgactatttt |
226 |
Q |
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| T |
8744524 |
gaaattaatattaattaaaatgacattaatgactatttt |
8744486 |
T |
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