View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_6 (Length: 556)
Name: NF6540_low_6
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_6 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 13 - 408
Target Start/End: Complemental strand, 41569445 - 41569048
Alignment:
| Q |
13 |
aaaatagaatagtcgaatataaaaatatgcaactcattgaaaccactatagtgtaacatctaaaaagatgcctaatactagggtccaaatatatgaactt |
112 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41569445 |
aaaataggatagtcgaatataaaaatatgcaactcattgaaaccactatagtgtaacatctaaaaagatgcctaaaactagggtccaaatatatgaactt |
41569346 |
T |
|
| Q |
113 |
aagtaaattttgaatactttccaaacttcaaatgcaacaatttcaataaatataatcaaattgtactatccaaacgacaatatactattcattcaag-cc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
41569345 |
aagtaaattttgaatactttccaaacttcaaatgcaacaatttcaataaatataatcaaattgtactatccaaacgacaatatactattcattgaagccc |
41569246 |
T |
|
| Q |
212 |
cctagtgtttttcttcacatg-ttgaaaaatcttattatttctattccgtcaaatctcaaaacaatttactatgaacataacatagtaacaggctcaata |
310 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41569245 |
cctagtgtttttcttcacatgtttgaaaaatcttattatttctattccgtcaaatctcaaaacaatttactatgaacataacatagtaacaggctcaata |
41569146 |
T |
|
| Q |
311 |
gtagcatggtgtttaaccaaacttgacattgcatgtaaaatttgttaggataaacttgatgaaaatacttctaaatatatactgcactagggctatca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
41569145 |
gtagcatggtgtttaaccaaacttgacattgcatgtaaaatttgttaggataaacttgatgaaaatacttctaaatatatactgcattagggctatca |
41569048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 406 - 540
Target Start/End: Complemental strand, 41569026 - 41568892
Alignment:
| Q |
406 |
tcaacaacagcaccacacctatgacaagaagtatcaatagtaagatggtgtaaacctctaaaagtgttagtagaaagactaccatgcatcaccaaccaac |
505 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
41569026 |
tcaacaaccgcaccacacctatgacaagaagtatcagtagtaagatggtgtaaacctctgaaagtgttagtaggaagactaccatgcatcaccaaccaac |
41568927 |
T |
|
| Q |
506 |
aaaaatctgtatgattatcaataaccggtagctgc |
540 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41568926 |
aaaaatctgtatgattatcaataaccggtagctgc |
41568892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 430123 - 430048
Alignment:
| Q |
215 |
agtgtttttcttcacatgttgaaaaatcttattatttctattccgtcaaatctcaaaacaatttactatgaacata |
290 |
Q |
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| T |
430123 |
agtgtctttcttcacatcttgaaaaatctcattatttctattccgccaaatctcaaaacatgttactatgaacata |
430048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 406 - 509
Target Start/End: Complemental strand, 429927 - 429824
Alignment:
| Q |
406 |
tcaacaacagcaccacacctatgacaagaagtatcaatagtaagatggtgtaaacctctaaaagtgttagtagaaagactaccatgcatcaccaaccaac |
505 |
Q |
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|||||| | ||||||||||||||||||||| ||| | |||||||||| |||||| | || | ||||||| |||||||||||||||||||||||||| |
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| T |
429927 |
tcaacagctgcaccacacctatgacaagaattattagaagtaagatggcagaaacctttgaatgcattagtaggaagactaccatgcatcaccaaccaac |
429828 |
T |
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| Q |
506 |
aaaa |
509 |
Q |
| |
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|||| |
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| T |
429827 |
aaaa |
429824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 14398 - 14323
Alignment:
| Q |
215 |
agtgtttttcttcacatgttgaaaaatcttattatttctattccgtcaaatctcaaaacaatttactatgaacata |
290 |
Q |
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| T |
14398 |
agtgtctttcttcacacgctgaaaaatctcattatttttattccgtcaaatctcaaaccaagttactatgaacata |
14323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 221 - 290
Target Start/End: Original strand, 37505996 - 37506064
Alignment:
| Q |
221 |
tttcttcacatgttgaaaaatcttattatttctattccgtcaaatctcaaaacaatttactatgaacata |
290 |
Q |
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||||||||||| ||||||||||| | |||||||| || ||||||||||||||| |||||||||||||| |
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| T |
37505996 |
tttcttcacattttgaaaaatctcttcgtttctatttcg-caaatctcaaaacaagttactatgaacata |
37506064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 511
Target Start/End: Original strand, 7725960 - 7725999
Alignment:
| Q |
472 |
ttagtagaaagactaccatgcatcaccaaccaacaaaaat |
511 |
Q |
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||||||| ||||||||| |||||||||||||||||||||| |
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| T |
7725960 |
ttagtaggaagactaccgtgcatcaccaaccaacaaaaat |
7725999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 27933080 - 27933145
Alignment:
| Q |
225 |
ttcacatgttgaaaaatcttattatttctattccgtcaaatctcaaaacaatttactatgaacata |
290 |
Q |
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||||||| ||||||||||| || ||||| || || | ||||||||||||| |||||||||||||| |
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| T |
27933080 |
ttcacattttgaaaaatctctttgtttctgtttcgccgaatctcaaaacaagttactatgaacata |
27933145 |
T |
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