View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_low_60 (Length: 241)

Name: NF6540_low_60
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_low_60
NF6540_low_60
[»] chr6 (2 HSPs)
chr6 (1-218)||(11106613-11106830)
chr6 (157-206)||(3535506-3535555)
[»] chr3 (3 HSPs)
chr3 (105-218)||(25452584-25452697)
chr3 (101-218)||(48766435-48766552)
chr3 (159-217)||(17229662-17229720)
[»] chr1 (3 HSPs)
chr1 (102-218)||(38953515-38953631)
chr1 (102-218)||(47243967-47244083)
chr1 (103-211)||(30198155-30198263)
[»] chr2 (1 HSPs)
chr2 (103-218)||(40799786-40799901)
[»] chr4 (1 HSPs)
chr4 (120-218)||(48425667-48425765)
[»] chr5 (1 HSPs)
chr5 (161-218)||(13136638-13136695)
[»] chr7 (2 HSPs)
chr7 (140-206)||(22042184-22042250)
chr7 (181-222)||(14670524-14670564)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 11106613 - 11106830
Alignment:
Q  1 tccaaattcattagataattgcatcaaattacatgcaatgagtaatgtaaaatttacattatggattataagatttcatgcacacatgatattgggtatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11106613 tccaaattcattagataattgcatcaaattacatgcaatgagtaatgtaaaatttacattatggattataagatttcatgcacacatgatattgggtatg 11106712  T
Q  101 tgggaatcagattccctgttgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgt 200  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| ||||||||| |||    
T  11106713 tgggaatcagattccctgttgatacagtagggtgttgtaaatgattcaggccatttaattttaaattgatggttgagattattttattgtgtgaaattgt 11106812  T
Q  201 gattaagtctggaccgac 218  Q
    |||||| |||||| ||||    
T  11106813 gattaaatctggatcgac 11106830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 3535506 - 3535555
Alignment:
Q  157 aattttaaattgatggctgagattattttactgtgtgaaactgtgattaa 206  Q
    |||||||||||||| || ||||| |||| ||||| |||||||||||||||    
T  3535506 aattttaaattgattgccgagatcatttcactgtatgaaactgtgattaa 3535555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 25452584 - 25452697
Alignment:
Q  105 aatcagattccctgttgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgtgatt 204  Q
    |||||||||||||| |||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452584 aatcagattccctgctgttacagcagggtgctgtaactgatccagaccattcaattttaaattgatggctgagattattttactgtgtgaaactgtgatt 25452683  T
Q  205 aagtctggaccgac 218  Q
    || |||||||||||    
T  25452684 aaatctggaccgac 25452697  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 101 - 218
Target Start/End: Complemental strand, 48766552 - 48766435
Alignment:
Q  101 tgggaatcagattccctgttgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgt 200  Q
    |||||||||||||||||| |||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||| |||    
T  48766552 tgggaatcagattccctgctgttacagcagggtgctgtaactgatccaggccattcaattttaaattgatggctgagattattttacaatgtgaaattgt 48766453  T
Q  201 gattaagtctggaccgac 218  Q
    |||||| |||| ||||||    
T  48766452 gattaaatctgaaccgac 48766435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 159 - 217
Target Start/End: Original strand, 17229662 - 17229720
Alignment:
Q  159 ttttaaattgatggctgagattattttactgtgtgaaactgtgattaagtctggaccga 217  Q
    |||||||||||||| ||| ||||||||||||||| | ||||||||||| ||||||||||    
T  17229662 ttttaaattgatggttgaaattattttactgtgtaagactgtgattaaatctggaccga 17229720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 38953515 - 38953631
Alignment:
Q  102 gggaatcagattccctgttgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgtg 201  Q
    |||||||||||||| || |||||||| |||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38953515 gggaatcagattccttgctgttacagcagggtgatgtaaatgatccaggccattcaattttaaattgatggctgagattattttactgtgtgaaactgtg 38953614  T
Q  202 attaagtctggaccgac 218  Q
    ||||| |||||||||||    
T  38953615 attaaatctggaccgac 38953631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 47243967 - 47244083
Alignment:
Q  102 gggaatcagattccctgttgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgtg 201  Q
    ||||||||||||||  |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  47243967 gggaatcagattcctcgttgttacagcagggtgttgtaactgatctaggccattcaattttaaattgatggctgagattattttactgtgtgaaaccgtg 47244066  T
Q  202 attaagtctggaccgac 218  Q
    ||||| | |||||||||    
T  47244067 attaaatatggaccgac 47244083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 30198155 - 30198263
Alignment:
Q  103 ggaatcagattccctgttgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgtga 202  Q
    |||||||||||||||| |||||||| |||||| ||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  30198155 ggaatcagattccctgctgttacagcagggtgctgtaactgatctaggtcattcaattttaaattgatggctgagattattttactgtgtgaaactgtga 30198254  T
Q  203 ttaagtctg 211  Q
    |||| ||||    
T  30198255 ttaaatctg 30198263  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 40799786 - 40799901
Alignment:
Q  103 ggaatcagattccctgttgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgtga 202  Q
    ||||||||||||||||||||||||  |||||| ||||||| |||||||||||| |||||||||||||||| |||||| |||||||| ||||||||| |||    
T  40799786 ggaatcagattccctgttgttacatcagggtgctgtaactaatccaggccattcaattttaaattgatggatgagatcattttactttgtgaaactttga 40799885  T
Q  203 ttaagtctggaccgac 218  Q
    |||| |||||||||||    
T  40799886 ttaaatctggaccgac 40799901  T

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Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 120 - 218
Target Start/End: Original strand, 48425667 - 48425765
Alignment:
Q  120 tgttacagtagggtgttgtaactgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgtgattaagtctggaccgac 218  Q
    |||||||| |||||| ||||| |||||||  |||||  ||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||    
T  48425667 tgttacagcagggtgctgtaattgatccaaaccattctattttaaattgatggctgagattattttactgtgtgaaactgtgattagatctgaaccgac 48425765  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 218
Target Start/End: Original strand, 13136638 - 13136695
Alignment:
Q  161 ttaaattgatggctgagattattttactgtgtgaaactgtgattaagtctggaccgac 218  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||    
T  13136638 ttaaattgatggctgagattatattactgtgtaaaactgtgattaaatctggaccgac 13136695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 22042250 - 22042184
Alignment:
Q  140 actgatccaggccatttaattttaaattgatggctgagattattttactgtgtgaaactgtgattaa 206  Q
    ||||||| | || ||| ||||||||||||||| |||| || |||||||||||| |||||||||||||    
T  22042250 actgatctatgcaattcaattttaaattgatgactgaaatcattttactgtgtaaaactgtgattaa 22042184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 14670524 - 14670564
Alignment:
Q  181 attttactgtgtgaaactgtgattaagtctggaccgacagat 222  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  14670524 attttactgtgtgaaactgtgattaagtct-gaccgacagat 14670564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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