View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_61 (Length: 241)
Name: NF6540_low_61
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2701139 - 2700918
Alignment:
| Q |
1 |
acgaagtgcactaaagattattattattatttctgaataagagataagcattgtccatagtcttggtaaactaagaagtagcaaacaacaaaactctgcc |
100 |
Q |
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| T |
2701139 |
acgaagtgcactaaagattattattattatttctgaataagagataaacattgtccatagtcttggtaaactaagaagtagcaaacaacaaaactctacc |
2701040 |
T |
|
| Q |
101 |
tctatctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaagatgttgctctgaatattcccttaatagcagaacatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2701039 |
tctatctttcttgaaactatcaatggaaggtgaaggtgataagtggcagcagtgtagtgaagatgttgctctgaatattcccttaatagcagagcatgaa |
2700940 |
T |
|
| Q |
201 |
ggaagccaaatttctggtaaca |
222 |
Q |
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||||||||||||||||| |||| |
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| T |
2700939 |
ggaagccaaatttctggcaaca |
2700918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 219
Target Start/End: Complemental strand, 10843596 - 10843482
Alignment:
| Q |
105 |
tctttcttgaaactatcaatggaaggagaaggtgataagtggcagcagtgtaatgaagatgttgctctgaatattcccttaatagcagaacatgaaggaa |
204 |
Q |
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|||| ||||||| |||||||||||||||||||||||||||||||| |||| |||||||| | |||||||| |||| | || ||||||||||||||| |
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| T |
10843596 |
tcttccttgaaaatatcaatggaaggagaaggtgataagtggcagaggtgtgatgaagatatctctctgaatgttcctcttttaacagaacatgaaggaa |
10843497 |
T |
|
| Q |
205 |
gccaaatttctggta |
219 |
Q |
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| T |
10843496 |
accaaatttctggta |
10843482 |
T |
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