View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6540_low_62 (Length: 238)

Name: NF6540_low_62
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6540_low_62
NF6540_low_62
[»] chr6 (1 HSPs)
chr6 (46-225)||(10150147-10150327)
[»] chr7 (1 HSPs)
chr7 (1-38)||(753347-753384)
[»] chr5 (2 HSPs)
chr5 (1-38)||(17777706-17777743)
chr5 (1-37)||(38149385-38149421)
[»] chr3 (2 HSPs)
chr3 (1-38)||(20143829-20143866)
chr3 (1-38)||(23269323-23269360)
[»] chr1 (1 HSPs)
chr1 (1-38)||(52013787-52013824)
[»] chr8 (1 HSPs)
chr8 (1-37)||(29972966-29973002)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 10150327 - 10150147
Alignment:
Q  46 tcagttataagatgttttcataagctgcttcggaaaacatacgaaaa-gtaaaccagaaacagtttataaacatgttataagtgtatatgaaaatatgat 144  Q
    |||||||||||||||||||||||||||||||| ||||||||||| || |||||| | |||||||||||| ||||||||||||||| |||||||  |||||    
T  10150327 tcagttataagatgttttcataagctgcttcgaaaaacatacgagaacgtaaactaaaaacagtttatagacatgttataagtgtttatgaaataatgat 10150228  T
Q  145 tagcaaaaccaaaagatcatgaaaacaagatatttgtgtgatttcacttaccttaatttctctgaatggaatcaacaaact 225  Q
    || |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10150227 taacaaaacaaagtgatcatgaaaacaagatatttgtgtgatttcacttaccttaatttctctgaatggaatcaacaaact 10150147  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 753384 - 753347
Alignment:
Q  1 aaacaacttaattaaatgtttatagcataaacacttat 38  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  753384 aaacaacttaattaagtgtttatagcataaacatttat 753347  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17777706 - 17777743
Alignment:
Q  1 aaacaacttaattaaatgtttatagcataaacacttat 38  Q
    ||||||||||||||| ||||||||||||| ||||||||    
T  17777706 aaacaacttaattaagtgtttatagcatacacacttat 17777743  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38149421 - 38149385
Alignment:
Q  1 aaacaacttaattaaatgtttatagcataaacactta 37  Q
    |||||||||||||||||  ||||||||||||||||||    
T  38149421 aaacaacttaattaaatagttatagcataaacactta 38149385  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20143829 - 20143866
Alignment:
Q  1 aaacaacttaattaaatgtttatagcataaacacttat 38  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  20143829 aaacaacttaactaaaggtttatagcataaacacttat 20143866  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23269360 - 23269323
Alignment:
Q  1 aaacaacttaattaaatgtttatagcataaacacttat 38  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  23269360 aaacaacttaactaaaggtttatagcataaacacttat 23269323  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52013787 - 52013824
Alignment:
Q  1 aaacaacttaattaaatgtttatagcataaacacttat 38  Q
    |||||||||||||||| |||||||||||||| ||||||    
T  52013787 aaacaacttaattaaacgtttatagcataaatacttat 52013824  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29972966 - 29973002
Alignment:
Q  1 aaacaacttaattaaatgtttatagcataaacactta 37  Q
    ||||||||||||| | |||||||||||||||||||||    
T  29972966 aaacaacttaattgagtgtttatagcataaacactta 29973002  T

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