View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_63 (Length: 237)
Name: NF6540_low_63
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 222
Target Start/End: Complemental strand, 2795174 - 2794965
Alignment:
| Q |
13 |
cataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagca |
112 |
Q |
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| T |
2795174 |
cataggcgcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagca |
2795075 |
T |
|
| Q |
113 |
acattggtttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctattcaattgta |
212 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2795074 |
acattggtttttccagcaccagttggagcacaaagtaaaagattatccgatttaaacagagcagtctcatataccttgctctgcactctattcaattgta |
2794975 |
T |
|
| Q |
213 |
tcattccttt |
222 |
Q |
| |
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|||||||||| |
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| T |
2794974 |
tcattccttt |
2794965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 29262680 - 29262478
Alignment:
| Q |
20 |
gcaacataaacaattttataagcactatggtcaattgaaccatcaccaggatttctatgccgtgcaatctcttgaagtatggtaagaacagcaacattgg |
119 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||| ||||||||| | | ||| |||||||| ||||||| |||||| || ||||||||||||||||| | |
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| T |
29262680 |
gcaacatatacaattttatatgcactgtggtcaatagaaccatcatcggtattcctatgccgcgcaatctgttgaaggatagtaagaacagcaacattcg |
29262581 |
T |
|
| Q |
120 |
tttttccagcaccagttgtagcacaaagtaaaagattatccgatttaaacagagcagtctcgtataccttgctctgcactctattcaattgtatcattcc |
219 |
Q |
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||||||||||||| || | |||||||| || | |||||| | ||| || |||||||| || || ||||||||||| ||||||||||| ||| ||||||| |
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| T |
29262580 |
tttttccagcaccggtaggggcacaaagcaacaaattatcaggtttgaagagagcagtttcataaaccttgctctgaactctattcaactgtgtcattcc |
29262481 |
T |
|
| Q |
220 |
ttt |
222 |
Q |
| |
|
||| |
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|
| T |
29262480 |
ttt |
29262478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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