View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_64 (Length: 232)
Name: NF6540_low_64
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_64 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 29906339 - 29906115
Alignment:
| Q |
1 |
atttggaagagatgcccttaatttaatgatgtcataagaaaatatgaaatttatcactcaagtcatggcttcattcatgcagctaattagtcaagtctct |
100 |
Q |
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| T |
29906339 |
atttggaagagatgcccttaatttaatgatgtcataagaaaatatgaaatttatcactcaagtcatggcttcattcatgcagctaattagtcaagtctct |
29906240 |
T |
|
| Q |
101 |
ttaacagttaaacatctagcatgcatggttccatagtatgaaacatattctggagactgttatagccaagtggatgatatatcacccatcactagtacat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29906239 |
ttaacagttaaacatctagcatgcatggttccatagtatgaaacatattctagagactgttatagccaagtggatgatttatcacccatcactagtacat |
29906140 |
T |
|
| Q |
201 |
agtgcactgttacacaggttctgct |
225 |
Q |
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|||||||||||||||| ||| |||| |
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| T |
29906139 |
agtgcactgttacacatgttttgct |
29906115 |
T |
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