View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_7 (Length: 526)
Name: NF6540_low_7
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_7 |
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| [»] chr7 (6 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 422; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 9 - 526
Target Start/End: Original strand, 28417908 - 28418423
Alignment:
| Q |
9 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
108 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28417908 |
agcatgggactacgagaagccgatgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagag |
28418007 |
T |
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| Q |
109 |
cttggtgttactctcatcccacctgttcaacacatgcaaactaat--gagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttata |
206 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28418008 |
cttggtgttactcttatcccacctgttcaacacatgcaaactaatatgagagaaatggctgatccttctaccatttcctccactgtcaaaagcttttat- |
28418106 |
T |
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| Q |
207 |
tatgattcaaatattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaacgactgtgaaaaacaaaagaatatcattgtcttttaga |
306 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418107 |
---gattcaaagattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaacgactgtgaaaaacaaaagaatatcattgtcttttaga |
28418203 |
T |
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| Q |
307 |
gtgttgctttggatagtagcatgttcttgatctcttgtacacatttacnnnnnnnatatgaaactgtaaataagagtgtgttgatttgtatcatgctctt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418204 |
gtgttgctttggatagtagcatgttcttgatctcttgtacacattgactttttttatatgaaactgtaaataagagtgtgttgatttgtatcatgctctt |
28418303 |
T |
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| Q |
407 |
gacttcttttacaagttatctcttttgttttgcttagaannnnnnnatttatgaccaaggtaaaacatattgatccaaatataaacaacttcagtttaat |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28418304 |
gacttcttttacaagttatctcttttgttttgcttagaatttttttatttatgaccaaggtaaaacatattgatccaaatataaacaacttcagtttaat |
28418403 |
T |
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| Q |
507 |
tttagaaatatcattaaaac |
526 |
Q |
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|||||||||||||||||||| |
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| T |
28418404 |
tttagaaatatcattaaaac |
28418423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 9 - 517
Target Start/End: Complemental strand, 28585326 - 28584797
Alignment:
| Q |
9 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28585326 |
agcatgggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagag |
28585227 |
T |
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| Q |
109 |
cttggtgttactctcatcccacctgttcaacacatgcaaacta--atgagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttata |
206 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |||||||||||| |
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| T |
28585226 |
cttggtgttactcttatcccacctgttcaacacatgcaaactaatatgagagaaatggctgatccttctaccatttcttcgaccgtcaaaagcttt---- |
28585131 |
T |
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| Q |
207 |
tatgattcaaatattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaac-gactgtgaaaaacaaaagaatatcattgtcttttag |
305 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||| |
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| T |
28585130 |
tatgattcaaagattttgaaagataaataaattgttggtgaggtttaggaagaatgttttaacggactgtgaaaaacaagagaatatcattgtcttctag |
28585031 |
T |
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| Q |
306 |
agtgttgctttggatagtagcatgttc-ttgatctcttgtacacatt----------------tacnnnnnnnatatgaaactgtaaataagagtgtgtt |
388 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||| ||| |||||||| ||||| || |||| |||| |
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| T |
28585030 |
agtgttgctttggatagtagcatgctctttgatctcttgtacacattggaatatgttcatgtatacttttttgatatgaaaatgtaagtatgagtttgtt |
28584931 |
T |
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| Q |
389 |
gatttgtatcatgctcttgacttcttttacaagttatctcttttgttttgcttagaa------nnnnnnnatttatgaccaaggtaaaacatattgatcc |
482 |
Q |
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| T |
28584930 |
gctttgtagcatgctcttaacttcttttacaagttatctcttttgttttgcttagaattttctttatattttttatgaccgaggtaaaacat-ttggtcc |
28584832 |
T |
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| Q |
483 |
aaatataaacaacttcagtttaattttagaaatat |
517 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28584831 |
aaatataaacaacttcagtttaattttagaaatat |
28584797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 351
Target Start/End: Original strand, 28404473 - 28404814
Alignment:
| Q |
9 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
108 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
28404473 |
agcatgggactacgagaagccgatgttcgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaacttcatgagcattgaagag |
28404572 |
T |
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| Q |
109 |
cttggtgttactctcatcccacctgttcaacacatgcaaactaat--gagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttata |
206 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| || || ||||||||||||||| |
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| T |
28404573 |
cttggtgttactctcatcccacctgttcaacacatgccaacaaatatgagagaaatggctgatccttctaccattttttcgaccgtcaaaagcttttat- |
28404671 |
T |
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| Q |
207 |
tatgattcaaatattctgaaagataaataaattgttggtgaggtttaggaagaatgttttaacgactgtgaaaaacaaaagaatatcattgtcttttaga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| | ||| ||||||||||||||||||||||| |||| |
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| T |
28404672 |
---gattcaaatattctgaaagataaataaattgttggtgaggtttaggaaa---gttataaccattgtacaaaacaaaagaatatcattgtctcctaga |
28404765 |
T |
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| Q |
307 |
gtgttgctttggatagta----gcatgttcttgatctcttgtacacatt |
351 |
Q |
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||||||||||||| |||| ||||| |||||||||| |||||||||| |
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| T |
28404766 |
gtgttgctttggacagtagcatgcatgctcttgatctcatgtacacatt |
28404814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 9 - 205
Target Start/End: Complemental strand, 28580326 - 28580128
Alignment:
| Q |
9 |
agcataggactacgagaagccgatgtttgttgcaccatcaatggatggttgtatgtggagaaaccctttcacagaacagaactccatgagcattgaagag |
108 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||| ||| | ||||||||||| |||||||||||||| | | ||||| |||||| || |
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| T |
28580326 |
agcatgggactacgagaagccgatgtttgttgcaccgtcaatgaatgatgccatgtggagaaatcctttcacagaacaacaattgatgaggattgaaaag |
28580227 |
T |
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| Q |
109 |
cttggtgttactctcatcccacctgttcaacacatgcaaacta--atgagagaaatggctgatccttctaccatttcatccactgtcaaaagcttttat |
205 |
Q |
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|||||||||||| | |||| ||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||| |||| |||||||||||||||| |
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| T |
28580226 |
cttggtgttactgttatccaacctgttgaacacatgccaactaatatgagagaaatggcagatccttctaccatttcctccaatgtcaaaagcttttat |
28580128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 28404870 - 28404922
Alignment:
| Q |
391 |
tttgtatcatgctcttgacttcttttacaagttatctcttttgttttgcttag |
443 |
Q |
| |
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|||||| ||| |||||||| |||||||||||||||||||||| ||||||||| |
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| T |
28404870 |
tttgtagcatactcttgaccccttttacaagttatctcttttggtttgcttag |
28404922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 27834806 - 27834771
Alignment:
| Q |
15 |
ggactacgagaagccgatgtttgttgcaccatcaat |
50 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
27834806 |
ggactacgagaagccggtgtttgttgcaccatcaat |
27834771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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