View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_70 (Length: 218)
Name: NF6540_low_70
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 2795182 - 2795389
Alignment:
| Q |
1 |
ttgtaactgagattgttggcaatttatctaatcgtctgcgtgaatatgatgttaaggttagggagcttagtggagaccagtcactaacacagaaacagat |
100 |
Q |
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| T |
2795182 |
ttgtaactgagattgttggcaatttatctaatcgtctgcaggaatatgatgttaaggttagggagcttagtggagaccagtcactaacacagaaacagat |
2795281 |
T |
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| Q |
101 |
ggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttcttatc |
200 |
Q |
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| T |
2795282 |
ggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttcttatc |
2795381 |
T |
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| Q |
201 |
attgatga |
208 |
Q |
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|||||||| |
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| T |
2795382 |
attgatga |
2795389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 29262707 - 29262902
Alignment:
| Q |
13 |
ttgttggcaatttatctaatcgtctgcgtgaatatgatgttaaggttagggagcttagtggagaccagtcactaacacagaaacagatggaagagactca |
112 |
Q |
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| T |
29262707 |
ttgttgggaatttgtctaatcggttgcaggactataatgttacggttagggagcttagtggagaccagtcactaaccaggcagcagatcgaagagactca |
29262806 |
T |
|
| Q |
113 |
aattattgtcacaactcctgagaagtgggatattattacacgaaagtcgggtgatcgaatttatactcagcttgtgaagcttcttatcattgatga |
208 |
Q |
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| T |
29262807 |
aattattgtgacaactcctgagaagtgggatattatcacccgaaagtcgggagatcgaacttatacgcagcttgtgaagcttgtcatcattgatga |
29262902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 29189413 - 29189353
Alignment:
| Q |
94 |
aacagatggaagagactcaaattattgtcacaactcctgagaagtgggatattattacacg |
154 |
Q |
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||||||| ||||||| ||| ||||| || |||||||||||||| || || ||||||||||| |
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| T |
29189413 |
aacagatagaagagagtcagattatggtgacaactcctgagaaatgagacattattacacg |
29189353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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