View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6540_low_9 (Length: 477)
Name: NF6540_low_9
Description: NF6540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6540_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 459
Target Start/End: Original strand, 32616121 - 32616570
Alignment:
| Q |
18 |
aagaacgtgaattgaagggacaacttatttctggagtcttaagtcatgctcagaatgatatggttggtaggatgctccatgatgatggtacagctgataa |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616121 |
aagaacgtgaattgaagggacaacttatttccggagtcttaagtcatgctcagaatgatatggttggtaggatgctccatgatgatggtacagctgataa |
32616220 |
T |
|
| Q |
118 |
agatgctatcaaaaggtctgcatattta--------attacacgtatgacagtatatataaatatgttttttatgagtgttttcttgctccttgtgatgc |
209 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616221 |
agatgctatcaaaaggtctgcatatttatatctttgattacacgtatgacaatatatataaatatgttttttatgagtgttttcttgctccttgtgatgc |
32616320 |
T |
|
| Q |
210 |
aataggttatttgagcaagttgatggcgatggcaataaccatgtttcaagatccgagttagagaaagtagttagggagactcattttggtaaggctgtag |
309 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32616321 |
aataggttatttgagcaagttgatggcgatggcgataaccatgtttcaagatccgagttagagaaagtagttagggagactcattttggtaaggctgtag |
32616420 |
T |
|
| Q |
310 |
atgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgacggcttcaccaaatggat |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32616421 |
atgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgatggcttcaccaaatggat |
32616520 |
T |
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| Q |
410 |
aaactcaaattctagtaaagcaggaagctcaaaatcttcttctcatgaaa |
459 |
Q |
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| T |
32616521 |
aaactcaaattctagtaaaccaggaagctcaaaatcttcttctcatgaaa |
32616570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 32634488 - 32634615
Alignment:
| Q |
18 |
aagaacgtgaattgaagggacaacttatttctggagtcttaagtcatgctcagaatgatatggttggtaggatgctccatgatgatggtacagctgataa |
117 |
Q |
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|||| ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| | ||||| |||||| ||||||| |
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| T |
32634488 |
aagagcgtgaattgaaagaacatcttatttctggagtcttaagtcatgctcagagtgatagggttggtaggctgctcaaagatgacggtacacctgataa |
32634587 |
T |
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| Q |
118 |
agatgctatcaaaaggtctgcatattta |
145 |
Q |
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||||||||||||||||||| ||| |||| |
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| T |
32634588 |
agatgctatcaaaaggtctacatgttta |
32634615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 311 - 416
Target Start/End: Original strand, 32634824 - 32634929
Alignment:
| Q |
311 |
tgcagaggaagcagtctcaaaactccttcacgatcttgatgccaacaaagacaatgagattagtgagaatgaatttgttgacggcttcaccaaatggata |
410 |
Q |
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|||||||||||||||| ||||| ||||||| | |||||||| |||| ||||||||| |||||||||| |||||||||||| || | ||| ||| |||| |
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| T |
32634824 |
tgcagaggaagcagtcacaaaattccttcaagttcttgatgtcaacggagacaatgaaattagtgagactgaatttgttgatggtataaccgaattgata |
32634923 |
T |
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| Q |
411 |
aactca |
416 |
Q |
| |
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|||||| |
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|
| T |
32634924 |
aactca |
32634929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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