View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6541_high_1 (Length: 834)
Name: NF6541_high_1
Description: NF6541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6541_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 17 - 824
Target Start/End: Complemental strand, 26871487 - 26870683
Alignment:
| Q |
17 |
cacattcaattctgaaagattaggatatgacagattatggaagtagcaactttctggtatgagttaacnnnnnnnttcaaagccgcatagaaaaacatcg |
116 |
Q |
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| T |
26871487 |
cacattcaattctgaaagattaggatatgacagattatggaagtagcaattttctggtatgagttaacaaaaaaattcaaagccgcatagaaaaacatcg |
26871388 |
T |
|
| Q |
117 |
cataccgtagtccataagtcttcattgagaaatcctagtatatttgcgttaaaatgcccaagtttgagatgattattattcagctcaaaaacttgatgtt |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||| |||||||||||| |
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| T |
26871387 |
cataccgtcgtccataagtcttcattgagaaatcctagtatatttgcgtttaaatgcccaagtttgagatgattgttgttcagctcataaacttgatgtt |
26871288 |
T |
|
| Q |
217 |
ttgaagcacaaacttaccacagttggcaccaaagtaaatacttaataacaatgtagcaagtatccaaacacttggagaaccttcccttaagagggtcagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
26871287 |
ttgaagcacaaacttaccacagttggcaccaaagtaaatacttaataacaatgtagcaattatccaaacacttggagaaccttcccttaagggggtcagt |
26871188 |
T |
|
| Q |
317 |
taaacacttcacttagcatctcactcaaacgactcaatatgggactcgggcacgctcataacatccaagtccctaccacagccccgtccctgagagctga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26871187 |
taaacacttcacttagcatctcactcaaacgactcaatatgggacacgggcacg-tcataacatccaagtccctaccacagccccgtccctgagagctga |
26871089 |
T |
|
| Q |
417 |
ttcccggcggctatactctgttgttttactcggcctttccagtcagtccttccacaggaagccctttccaggccaacgacaatcagttctgataccaatt |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
26871088 |
ttcccggcggctatactctgttgttttactcggcctttccagtcagtccttccataggaagccctttccaagccaacgacaatcaattctgataccaatt |
26870989 |
T |
|
| Q |
517 |
gataagcatcgacgcgcttggaaaaccatcccttaaaagctagctattaaaggnnnnnnnnncgagccaataaatacttcaatgaccaccccatactact |
616 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
26870988 |
gataagcatcaacgcgcttggaaaaccatcccttaaaagctagctattaaaggaaaaaaaat-gagccactaaatacttcaatgaccaccccatactact |
26870890 |
T |
|
| Q |
617 |
caatgaggaacatgggtaccccataggacccaagtccttatcacaacgcttttgaatgaaagagaaaatgcggcatgtggcatctacacttttgaaggtt |
716 |
Q |
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|||||||||| |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26870889 |
caatgaggaatatgggtactccatagtacccaagtccttatcacaatgcttttgaatgaaagagaaaatgcggcatgtggcatctacacttttgaagctt |
26870790 |
T |
|
| Q |
717 |
gcaaacacaattacaaaataaataatgagtaagaaagtaaaaaactttggagaagtgaatagactaaaagcagcctcgttaaagcaaatacacgaacatt |
816 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| |
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| T |
26870789 |
gcaaacacaattacaaaataaataatgagtaagaaagtaaaaaactttggagaagtgaatagactaaaagcagccccgtt-aggcaaatacacgaacatt |
26870691 |
T |
|
| Q |
817 |
tgatgatg |
824 |
Q |
| |
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|||||||| |
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| T |
26870690 |
tgatgatg |
26870683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 450 - 563
Target Start/End: Original strand, 20722981 - 20723094
Alignment:
| Q |
450 |
cctttccagtcagtccttccacaggaagccctttccaggccaacgacaatcagttctgataccaattgataagcatcgacgcgcttggaaaaccatccct |
549 |
Q |
| |
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|||||||||||| ||||||| ||| ||||||||||| |||| || ||| ||| ||| ||||||||| ||||| ||| | || |||| ||| ||||| |
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| T |
20722981 |
cctttccagtcatcccttccataggtagccctttccaagccaccggcaaccagctcttataccaattaataagtatctaagcacttgatgaactttccct |
20723080 |
T |
|
| Q |
550 |
taaaagctagctat |
563 |
Q |
| |
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| T |
20723081 |
taaaagctagctat |
20723094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 500 - 569
Target Start/End: Complemental strand, 44400085 - 44400016
Alignment:
| Q |
500 |
cagttctgataccaattgataagcatcgacgcgcttggaaaaccatcccttaaaagctagctattaaagg |
569 |
Q |
| |
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||||||||||||||||| || || ||| | || ||||| ||||| |||||||||||||| |||| ||||| |
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| T |
44400085 |
cagttctgataccaattaatcagtatctaagcacttgggaaaccctcccttaaaagctatctatcaaagg |
44400016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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