View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_high_2 (Length: 425)
Name: NF6542_high_2
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 11390443 - 11390837
Alignment:
| Q |
18 |
gattggtgatgatgacattgttagtaattgaatggaaataaaacgaggaatgaatgaatggaaataagtagattgttgattttgatttttcaaaccaaac |
117 |
Q |
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| T |
11390443 |
gattggtgatgatgacattgttagtaattgaatggaaataaaacgaggaatgaatgaatggaaataagtagattgttgattttgatttttcaaaccaaac |
11390542 |
T |
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| Q |
118 |
cattgcatgttttctgaatagtcaaatgagacttagctaacatgataagattcaactattttggtttttgactaaacatgcaatgcaagagtttaatggt |
217 |
Q |
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| T |
11390543 |
cattgcatgttttctgaatagtcaaatgagacttagctaacatgataagattcaactattttgctttttgactaaacatgcaatgcaagagtttaatggt |
11390642 |
T |
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| Q |
218 |
ttgtattcaaacaaaccactgcagtcaaatgaaagacattatgattcaatgcagtcatgtcgtcgagtgtttcataaccactcaatcaaaaattggacat |
317 |
Q |
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| T |
11390643 |
ttgtattcaaacaaacaactgcagtcaaatgaaagacattatgattcaatgcagtcatgtcgtcgagtgtttcataaccactcaatcaaaaattggacat |
11390742 |
T |
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| Q |
318 |
gcatgcatcttttgactga---gttattgcaagtagggtgtgactttctctaagcaaaaagggaattaataaaaatgtcatgcattcacctctct |
409 |
Q |
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| T |
11390743 |
gcatgcatcttttgactgagttgttattgtaagtagggtgtgactttctctaagcaaaaagggaattaataaaaatgtcatgcattcacctctct |
11390837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 11433714 - 11433682
Alignment:
| Q |
19 |
attggtgatgatgacattgttagtaattgaatg |
51 |
Q |
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| T |
11433714 |
attggtgatgatgacattgttaggaattgaatg |
11433682 |
T |
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