View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_high_3 (Length: 423)
Name: NF6542_high_3
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 47988966 - 47988568
Alignment:
| Q |
9 |
gagatgaagaaagttgacaaatgcaatattgggtttgaagatgacaaacttccaagcgacgtcgttgtgatatggcttgcgtgtgtccctcgttcagtcg |
108 |
Q |
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| T |
47988966 |
gagataaagaaagttgacaaatgcaatattgggtttgaagatgacaaacttccaagcgacgtcgttgtgatatggcttgcgtgtgtccctcgttcagtcg |
47988867 |
T |
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| Q |
109 |
ctcttaacaaacaaccccctcccgtgttgatgacatttggtggttgtcattgttaaaaagaggattaccaggttggaataacccgtacaagtcctaaaag |
208 |
Q |
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| T |
47988866 |
ctcttaacaaacaaccccctgccgtgttgatgatatttagtggttgtcattgttaaaaagaggattaccaggttggaataacccgtacaagtcctaaaag |
47988767 |
T |
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| Q |
209 |
ggcatggccaggttttaaacatactcaaagcaaaagtgaggaaactgcatcaagagcatacaagtttaattttggagaccacactggttagtaatttatc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
47988766 |
ggcatggccaggttttaaacatactcaaagcaaaagtgaggaagctgcatcaagagcatacaagtttaattttggagac--cactggttagtaatttatc |
47988669 |
T |
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| Q |
309 |
attatccatacaatgctcttctcatatgttgatacttttctgcac-nnnnnnnnnnnnnnnggttatttatatccaccatgtttctaccacatgctgtaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47988668 |
attatccatacaatgctcttctcatatgttgatacttttctgcacttttttttttttttttggttatttatatccaccatgtttctaccacatgctgtaa |
47988569 |
T |
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