View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_low_1 (Length: 606)
Name: NF6542_low_1
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 20 - 597
Target Start/End: Complemental strand, 52592801 - 52592224
Alignment:
| Q |
20 |
ctaatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccaaaaaccgtattttg |
119 |
Q |
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| T |
52592801 |
ctaatagcccaatatagtctataaactaatgccatctttatgtttttggtcttgtttaataacttaggtaatcttccccacctccgaaaaccgtattttg |
52592702 |
T |
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| Q |
120 |
tattccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccat |
219 |
Q |
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| T |
52592701 |
tattccataataatcataatgtgcttttgattgaaattcattgttatcagaatagaagatgaaatattgcataatcatcgccaagacaattgtttcccat |
52592602 |
T |
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| Q |
220 |
tgaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatc |
319 |
Q |
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| T |
52592601 |
tgaaaaagatatcaagctgatttcattgttgtgaagagaccagaagtgaggttcttgttcccaacaagtgctgatcttgtcttgtaacttagaatgtatc |
52592502 |
T |
|
| Q |
320 |
ccaaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatgaatctgtagcagaacaaaatgg |
419 |
Q |
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| T |
52592501 |
ccaaccaagcattctcttcagggtcctatatggatatgttcacctcgagtcctttgttaccttacaattactacaatgaatctgtagcagaacaaaatgg |
52592402 |
T |
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| Q |
420 |
aatcaagtttaacacgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgcttacaactctcatgtagatgagcaaagtatacaa |
519 |
Q |
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| T |
52592401 |
aatcaagtttaacatgcctataggcgacacagtgactatgcaatccattgatgagcattccaatgcttacaactctcatgtagatgagcaaagtatacaa |
52592302 |
T |
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| Q |
520 |
tgccaagagttatctcttaggctcgggacactactgccttccaatgcatctgtccctccatttcaataccagtataat |
597 |
Q |
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| T |
52592301 |
tgccaagagttatctcttaggctcgggacactactgccttccaatgtatctgtccctccatttcaataccagtataat |
52592224 |
T |
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