View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_low_10 (Length: 249)
Name: NF6542_low_10
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_low_10 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 31039146 - 31038898
Alignment:
| Q |
1 |
ttaaaattcttttacttgttacctgtgttacagaggtgtatcccagtatttcttactgaagagattgttcatcagtactataatggctattgcaataaca |
100 |
Q |
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| T |
31039146 |
ttaaaattcttttacttgttacctgtgttacagaggtgtatcccagtatttcttactgaagagattgttcatcagtactataatggctattgcaataaca |
31039047 |
T |
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| Q |
101 |
ttttgtggcccctttttcattaccttggacttccacaagaagatcgtctagcgacaacacgtggattccagtctcagtttgattcgtatcaggtagcaaa |
200 |
Q |
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| T |
31039046 |
ttttgtggcccctttttcattaccttggacttccacaagaagatcgtctagcgacaacacgtggattccagtctcagtttgattcgtatcaggtggcaaa |
31038947 |
T |
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| Q |
201 |
ccaaatgtttgctgatgttgtaaatcaggtctatgaagagggagatatt |
249 |
Q |
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| T |
31038946 |
ccaaatgtttgctgatgttgtaaatcaggtctatgaagagggagatatt |
31038898 |
T |
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Target: scaffold0034 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 91503 - 91385
Alignment:
| Q |
31 |
cagaggtgtatcccagtatttcttactgaagagattgttcatcagtactataatggctattgcaataacattttgtggcccctttttcattaccttggac |
130 |
Q |
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| T |
91503 |
cagaggtgtatcccggtatttctggaagaagaaattgttcatcaatattacaatggctattgcaacaatatattatggccacttttccattaccttgcac |
91404 |
T |
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| Q |
131 |
ttccacaagaagatcgtct |
149 |
Q |
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| T |
91403 |
ttccacaagaagaccgtct |
91385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 74 - 140
Target Start/End: Original strand, 36375115 - 36375181
Alignment:
| Q |
74 |
agtactataatggctattgcaataacattttgtggcccctttttcattaccttggacttccacaaga |
140 |
Q |
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| T |
36375115 |
agtactataatggctattgcaacaacatcttgtggccactatttcattatcttggacttccacaaga |
36375181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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