View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6542_low_13 (Length: 238)

Name: NF6542_low_13
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6542_low_13
NF6542_low_13
[»] chr3 (5 HSPs)
chr3 (121-178)||(42908072-42908129)
chr3 (9-51)||(42908239-42908281)
chr3 (126-177)||(53351407-53351458)
chr3 (121-168)||(45158730-45158777)
chr3 (126-168)||(52404151-52404193)
[»] chr8 (4 HSPs)
chr8 (121-178)||(597379-597436)
chr8 (122-168)||(32492962-32493008)
chr8 (121-169)||(39375383-39375431)
chr8 (9-51)||(597548-597591)
[»] chr1 (4 HSPs)
chr1 (122-177)||(49241949-49242004)
chr1 (126-169)||(33690331-33690374)
chr1 (121-169)||(5384571-5384618)
chr1 (121-169)||(40959977-40960025)
[»] chr5 (2 HSPs)
chr5 (121-178)||(33111862-33111919)
chr5 (121-168)||(389499-389546)
[»] scaffold0116 (1 HSPs)
scaffold0116 (126-177)||(8073-8124)
[»] chr4 (4 HSPs)
chr4 (129-169)||(19916321-19916361)
chr4 (121-168)||(1936264-1936311)
chr4 (121-167)||(25232435-25232481)
chr4 (121-161)||(55675726-55675766)
[»] chr2 (1 HSPs)
chr2 (121-164)||(35333071-35333114)
[»] chr7 (1 HSPs)
chr7 (121-167)||(5419134-5419179)


Alignment Details
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 42908129 - 42908072
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttctagttttctc 178  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42908129 ctacatattatattaatattaatagatatgcaaatcaaaatatatttctagttttctc 42908072  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 42908281 - 42908239
Alignment:
Q  9 acatcatcattcaagaaaaatacacatctattttcttttgttc 51  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42908281 acatcatcattcaagaaaaatacacatctattttcttttgttc 42908239  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 53351458 - 53351407
Alignment:
Q  126 tattatattattattaatagatatgcaaatcaaaatatatttctagttttct 177  Q
    |||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  53351458 tattatattaatattaatagatatgcaaatcaaaatatattttttgttttct 53351407  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 45158777 - 45158730
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttc 168  Q
    ||||||||||||||| |||||||| ||||||||| |||||| ||||||    
T  45158777 ctacatattatattaatattaatatatatgcaaaacaaaatctatttc 45158730  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 168
Target Start/End: Original strand, 52404151 - 52404193
Alignment:
Q  126 tattatattattattaatagatatgcaaatcaaaatatatttc 168  Q
    |||||||||| |||||||| ||||||||| |||||||||||||    
T  52404151 tattatattaatattaatatatatgcaaaacaaaatatatttc 52404193  T

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Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 121 - 178
Target Start/End: Complemental strand, 597436 - 597379
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttctagttttctc 178  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  597436 ctacgtattatattaatattaatagatatgcaaatcaaaatatatttctagttttctc 597379  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 32492962 - 32493008
Alignment:
Q  122 tacatattatattattattaatagatatgcaaatcaaaatatatttc 168  Q
    |||||||||||||| |||||||| ||||||||| |||||||||||||    
T  32492962 tacatattatattaatattaatatatatgcaaaacaaaatatatttc 32493008  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 39375431 - 39375383
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttct 169  Q
    ||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  39375431 ctacatattatattaatattaatatatatgcaaaacaaaatttatttct 39375383  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 597591 - 597548
Alignment:
Q  9 acatcatcattcaagaaaaa-tacacatctattttcttttgttc 51  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  597591 acatcatcatttaagaaaaaatacacatctattttcttttgttc 597548  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 49242004 - 49241949
Alignment:
Q  122 tacatattatattattattaatagatatgcaaatcaaaatatatttctagttttct 177  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  49242004 tacatattatattaatattaatagatatgcaaatcaaaatatattttttgttttct 49241949  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 33690374 - 33690331
Alignment:
Q  126 tattatattattattaatagatatgcaaatcaaaatatatttct 169  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  33690374 tattatattaatattaatagatatgtaaatcaaaatatatttct 33690331  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 5384571 - 5384618
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttct 169  Q
    ||||||||||||||| |||||||| ||||||||| |||||| |||||||    
T  5384571 ctacatattatattaatattaatatatatgcaaa-caaaatctatttct 5384618  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 40959977 - 40960025
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttct 169  Q
    |||| |||||| ||| |||||||||||||||||| |||||| |||||||    
T  40959977 ctacgtattatgttaatattaatagatatgcaaaacaaaatttatttct 40960025  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 33111862 - 33111919
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttctagttttctc 178  Q
    |||| |||||||||| |||||||||||| | |||||||||||||||||||||||||||    
T  33111862 ctacgtattatattaatattaatagataagaaaatcaaaatatatttctagttttctc 33111919  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 389499 - 389546
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttc 168  Q
    ||||||||||||||| |||||||| ||||||||| |||||| ||||||    
T  389499 ctacatattatattaatattaatatatatgcaaaacaaaatctatttc 389546  T

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Target: scaffold0116 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 126 - 177
Target Start/End: Complemental strand, 8124 - 8073
Alignment:
Q  126 tattatattattattaatagatatgcaaatcaaaatatatttctagttttct 177  Q
    |||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  8124 tattatattaatattaatagatatgcaaatcaaaatatattttttgttttct 8073  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 19916321 - 19916361
Alignment:
Q  129 tatattattattaatagatatgcaaatcaaaatatatttct 169  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  19916321 tatattaatattaataaatatgcaaatcaaaatatatttct 19916361  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 1936264 - 1936311
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatatttc 168  Q
    ||||||||||||||| |||||||| ||||||||| |||||| ||||||    
T  1936264 ctacatattatattaatattaatatatatgcaaaacaaaatctatttc 1936311  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Original strand, 25232435 - 25232481
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatattt 167  Q
    ||||||||||||||| |||||||| ||||||||| |||||| |||||    
T  25232435 ctacatattatattaatattaatatatatgcaaaacaaaatctattt 25232481  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Complemental strand, 55675766 - 55675726
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaat 161  Q
    ||||||||||||||| |||||||| ||||||||| ||||||    
T  55675766 ctacatattatattaatattaatatatatgcaaaacaaaat 55675726  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 35333114 - 35333071
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatata 164  Q
    |||||||||||| || |||||||||||||||||| |||||||||    
T  35333114 ctacatattatagtaatattaatagatatgcaaaacaaaatata 35333071  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 5419179 - 5419134
Alignment:
Q  121 ctacatattatattattattaatagatatgcaaatcaaaatatattt 167  Q
    |||||||||||||||||||||||||||||| ||| |||||| |||||    
T  5419179 ctacatattatattattattaatagatatg-aaaacaaaatctattt 5419134  T

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