View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_low_4 (Length: 379)
Name: NF6542_low_4
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 2146553 - 2146897
Alignment:
| Q |
18 |
tggaaaatatgaatgaaattctcaaggtagccattagatatgagagtacatgtagtgtgtgtgagtccactataatgggacgagacataaa-gtttgtat |
116 |
Q |
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| T |
2146553 |
tggaaaatatgaatgaaattctcaaggtagccattagtaatgagagtacatgtggtgtgtgtgagtc-actataatgggacgagacataaaagtttgtat |
2146651 |
T |
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| Q |
117 |
attccaatcaatgcctacttaatcctagcattactcgtccaatattattttccttatgtgtccatttggattatgtatactgtcccttttatctcaacga |
216 |
Q |
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| T |
2146652 |
attccaatcaatgcctacttaatcctagcattactcgtccaatattattttccttatgtgtccatttggattatgtatactgtcccttttatctcaacga |
2146751 |
T |
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| Q |
217 |
atctagttctttgatggactactgcaaaggagcatgcgatatataagttcaatgatagcaagaagtccaaatattcttaggtctattgttctttgagaat |
316 |
Q |
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| T |
2146752 |
atctagttctttgatggactactgcaaaggagcatgcgatatataagttcaatgatagcaagaagtccaaatattcttaggtctattgttctttgagaat |
2146851 |
T |
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| Q |
317 |
gtagtagtatataacaagagtcttgctatctctaaaaataaaataa |
362 |
Q |
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| T |
2146852 |
gtagtagtatataacaagagtcttgctatctctaaaaataaaataa |
2146897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 306
Target Start/End: Original strand, 2142470 - 2142672
Alignment:
| Q |
86 |
actataatgggacgagacataaagtttgtatattccaatcaatgcctacttaatcctagcattactcgtccaatattattttccttatgtgtccatttgg |
185 |
Q |
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| T |
2142470 |
actataatgggatgagacataaagtttgtgtattccaattaatgcctacttaatcctagtattactcgtccagt-----------tatgtctcaatttgg |
2142558 |
T |
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| Q |
186 |
attatgtatactgtcccttttatctcaacgaatctagttctttgatggactactgcaaaggagcatgcgatatataagttcaatgatagcaagaagtcca |
285 |
Q |
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| T |
2142559 |
attatctatgttgtcc-ttttatctcaacgaatttagttgcttgattgactagtacgaagaac------agatataagttcaatgatagcaagaagtcca |
2142651 |
T |
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| Q |
286 |
aatattcttaggtctattgtt |
306 |
Q |
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| T |
2142652 |
aacattttcaggcctattgtt |
2142672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 2142387 - 2142429
Alignment:
| Q |
18 |
tggaaaatatgaatgaaattctcaaggtagccattagatatga |
60 |
Q |
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| T |
2142387 |
tggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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