View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_low_5 (Length: 378)
Name: NF6542_low_5
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_low_5 |
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| [»] scaffold0034 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 31039473 - 31039167
Alignment:
| Q |
18 |
attagtctacattttgtagcaatatcatggcttgcagcattactataatcacaactg----cgcaactgtaatttagaaccatgatttggccactaggtt |
113 |
Q |
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| T |
31039473 |
attagtctacattttatagcaatatcatggcttgcagcattactataatcacaactgtgatcgcaactgta-tttagaaccatgatttggccactaggtt |
31039375 |
T |
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| Q |
114 |
acatagagttttctaacggggctgcattcttttgtaaaggtgtgaaggattttgaagcgaggtggataggttgggccggtgtcaatgtggcggatgcggt |
213 |
Q |
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| T |
31039374 |
acatagagttttctaatggggctgcattcttttgtaaaggtgtgaaggattttgaagcgaggtggataggttgggccggtgtcaatgtggcggatgcggt |
31039275 |
T |
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| Q |
214 |
tggacagaagacactcactgaagcattagctgaaaaggtactatattttctccatcacaatgttagaaataacttctgcatttgtcattgtgctgttaca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31039274 |
tggacagaagacactcactgaagcattagctgaaaaggtactatattttctccatcacaatgttagaaataacttctgcatttatcattgtgctgttaca |
31039175 |
T |
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| Q |
314 |
tcagttga |
321 |
Q |
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| T |
31039174 |
tcagttga |
31039167 |
T |
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Target: scaffold0034 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 91903 - 91799
Alignment:
| Q |
149 |
aaaggtgtgaaggattttgaagcgaggtggataggttgggccggtgtcaatgtggcggatgcggttggacagaagacactcactgaagcattagctgaaa |
248 |
Q |
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||||| ||||||| |||||| || ||||||||||||||||| ||||||||||| | |||| ||||||||| ||| |||||||| ||||||| ||||||| |
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| T |
91903 |
aaaggcgtgaaggcttttgaggcaaggtggataggttgggctggtgtcaatgtcccagatgaggttggacaaaaggcactcactaaagcattggctgaaa |
91804 |
T |
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| Q |
249 |
aggta |
253 |
Q |
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||||| |
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| T |
91803 |
aggta |
91799 |
T |
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