View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_low_8 (Length: 273)
Name: NF6542_low_8
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 259
Target Start/End: Original strand, 17102837 - 17103085
Alignment:
| Q |
12 |
aaagggtaactaaataaattaatcattatcagctagaaaatgatacaactgctatttgactaaagaaaactagaattccttacaagttcataaatgaatt |
111 |
Q |
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| T |
17102837 |
aaagggtaactaaataaattaatcattatcagctagaaaatgatacaactgctatttgactaaagaaaactagaattccttacaagttcataaataaatt |
17102936 |
T |
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| Q |
112 |
gtttgtttacatacaaagaaaacataatggaat-atcatttagcatcaatttcggtgctctttcttgtgaacattctctggaggcattgccacaattgac |
210 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17102937 |
gtttgtttgcatacaaagaaaacataatggaataatcatttagcatcaatttcggtgctctttcttgtgaacattctctggaggcattgccacaattgac |
17103036 |
T |
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| Q |
211 |
ttcatcctactcctgagtggttgttagctctgaattttgtcttgttttt |
259 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17103037 |
ttcatccttctcctgagtggttgttagctctgaattttgtcttgttttt |
17103085 |
T |
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