View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6542_low_9 (Length: 250)
Name: NF6542_low_9
Description: NF6542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6542_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 235
Target Start/End: Complemental strand, 7006508 - 7006285
Alignment:
| Q |
12 |
atgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaattttatatggtatatacaaaaatatggactagggcttagg |
111 |
Q |
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| T |
7006508 |
atgaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaattttatatggtatatacaaaaatatggactagggcttagg |
7006409 |
T |
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| Q |
112 |
tgtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagcagctgaggatttga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||| |
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| T |
7006408 |
tgtattacctgcatacagttcactcttccaccattgcttgtgatggaggtaatgtcattgttggtcttcttggtcactgggaaaccagctgaggatttga |
7006309 |
T |
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| Q |
212 |
gaccgatgaatggagcaaccaagt |
235 |
Q |
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||||| |||||||||||||||||| |
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| T |
7006308 |
gaccggtgaatggagcaaccaagt |
7006285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 7009590 - 7009366
Alignment:
| Q |
14 |
gaatcataatttaagtaaccttaaggtacataaatatgtaacataacatgaaattaaatt----ttatatggtatatacaaaaatatggactagggctta |
109 |
Q |
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| T |
7009590 |
gaataataatttaagtaaccttaaggtacatacatatgtaacataacatgaaattcaattaatttttgatggggtatgcaaaaatatggattatggatta |
7009491 |
T |
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| Q |
110 |
ggtgtattacctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttggtctttttggtaactgggaaagcagctgaggattt |
209 |
Q |
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| T |
7009490 |
g-tgtattacctgcatacagttcactcttccaccattgcttgcaatggaggtaatgtcattgttggtctttttggtaactgggaaagcagctgaggattt |
7009392 |
T |
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| Q |
210 |
gagaccgatgaatggagcaaccaagt |
235 |
Q |
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| T |
7009391 |
gagaccggtgaatggggcaaccaagt |
7009366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 1393785 - 1393729
Alignment:
| Q |
118 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
174 |
Q |
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| T |
1393785 |
acctgcatgcagtttactcttccaccattgcttgtaatggaggtaatgtctttgttg |
1393729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 1350174 - 1350118
Alignment:
| Q |
118 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
174 |
Q |
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| T |
1350174 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
1350118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 1358129 - 1358073
Alignment:
| Q |
118 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
174 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||| |
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| T |
1358129 |
acctgcatgcagtttactcttccaccattgcttgtaatagaggtaatgtccttgttg |
1358073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Complemental strand, 1373472 - 1373416
Alignment:
| Q |
118 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgttg |
174 |
Q |
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|||||||| ||||| |||||||| |||||||||| || |||||||||||| |||||| |
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| T |
1373472 |
acctgcatgcagtttactcttccgccattgcttgtaatggaggtaatgtctttgttg |
1373416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 1383748 - 1383693
Alignment:
| Q |
118 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt |
173 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||| |||||||| ||||| |
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| T |
1383748 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
1383693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 173
Target Start/End: Complemental strand, 1389853 - 1389798
Alignment:
| Q |
118 |
acctgcatacagttcactcttccaccattgcttgcaagggaggtaatgtcattgtt |
173 |
Q |
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|||||||| ||||| ||||||||||||||||||| || ||| |||||||| ||||| |
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| T |
1389853 |
acctgcatgcagtttactcttccaccattgcttgtaatggaagtaatgtctttgtt |
1389798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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