View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6543_low_4 (Length: 228)
Name: NF6543_low_4
Description: NF6543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6543_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 115; Significance: 1e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 3228840 - 3228719
Alignment:
| Q |
5 |
caagtctgacattccctccaagctatatagcaaagttgtgggtattttgtgcatcatctctcttggtattctatttccaacaacaccacaacaaacacat |
104 |
Q |
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| T |
3228840 |
caagtctgacattccctccaagctatatagcaaagttgtgggtattttgtgcatcatctctcttggtattctatttccaacaacaccacaacaaacacat |
3228741 |
T |
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| Q |
105 |
taagataagattaaaattaagat |
127 |
Q |
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|||||||||| |||||||||||| |
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| T |
3228740 |
taagataaga-taaaattaagat |
3228719 |
T |
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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 78
Target Start/End: Original strand, 3183191 - 3183248
Alignment:
| Q |
21 |
tccaagctatatagcaaagttgtgggtattttgtgcatcatctctcttggtattctat |
78 |
Q |
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|||||||||| ||||||||||| || | ||| ||||| ||||||||||||||||||| |
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| T |
3183191 |
tccaagctatggagcaaagttgtaggcactttatgcattatctctcttggtattctat |
3183248 |
T |
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