View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6544_high_2 (Length: 545)

Name: NF6544_high_2
Description: NF6544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6544_high_2
NF6544_high_2
[»] chr6 (3 HSPs)
chr6 (18-532)||(33039699-33040227)
chr6 (320-397)||(33041144-33041221)
chr6 (405-451)||(9620684-9620730)
[»] chr4 (2 HSPs)
chr4 (474-532)||(22057463-22057521)
chr4 (407-451)||(18524960-18525003)
[»] chr2 (2 HSPs)
chr2 (405-451)||(4104829-4104875)
chr2 (405-449)||(34257110-34257154)
[»] chr3 (1 HSPs)
chr3 (472-524)||(31016230-31016283)
[»] chr8 (1 HSPs)
chr8 (426-462)||(22845882-22845918)
[»] chr7 (1 HSPs)
chr7 (407-451)||(338236-338280)


Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 18 - 532
Target Start/End: Original strand, 33039699 - 33040227
Alignment:
Q  18 aacattttgacttagattcaaatggaaattgtgaaaaatgattaagccattaattaatttaatccttgaattatcactctccaatttagtctttaaactt 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33039699 aacattttgacttagattcaaatgaaaattgtgaaaaatgattaagccatgaattaatttaatccttgaattatcactctccaatttagtctttaaactt 33039798  T
Q  118 gtaaatacttgttagtcattgatacttcaatttagtcccttatgttaagatgcccaatttttcctcnnnnnnnnnnnnnttaagatgcccaatttagtca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||    
T  33039799 gtaaatacttgttagtcattgatacttcaatttagtcccttatgttaagatgcccaatttttcctcaaaaaaaataaa-ttaagatgcccaatttagtca 33039897  T
Q  218 ttaaacttgtaaatatacttattagtccttgaagtgtatataatacttgaatttagtcccttctattaag---------------ttgacagatttttga 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||||||    
T  33039898 ttaaacttgtaaatatacttattagtccttgaagtgtatataatacttgaatttagtcccttctattaagttgttaggaactaagttgacagatttttga 33039997  T
Q  303 taaacattagggacaaaatttcagaatttcatattattcggggactatttattatattaaaaagtttatgcactaaattgaagggagaatgatagatcaa 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33039998 taaacattagggacaaaatttcagaatttcatattattcggggactatttattatattaaaaagtttatgcactaaattgaagggagaatgatagattaa 33040097  T
Q  403 atgcttaaatgcatttttgactccttaacctttaaaaagttgtgattttacccctctaacnnnnnnnttacaattttgctctctatccttaggaaaatgt 502  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||       | |||||||||| ||||||||||||||||||||    
T  33040098 atgcttaaatgcatttttgactccctaacctttaaaaagttgtgattttacccctctaacaaaaaaataacaattttgccctctatccttaggaaaatgt 33040197  T
Q  503 gatcttttgactctatctatatgaacatat 532  Q
    ||||||||||||||||||||||||||||||    
T  33040198 gatcttttgactctatctatatgaacatat 33040227  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 397
Target Start/End: Original strand, 33041144 - 33041221
Alignment:
Q  320 atttcagaatttcatattattcggggactatttattata-ttaaaaagtttatgcactaaattgaagggagaatgatag 397  Q
    ||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||    
T  33041144 atttcagaatttcatatcatttggggactacttattatatttaaaaagtttatgcaccaaattgaa-ggagaatgatag 33041221  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 451
Target Start/End: Complemental strand, 9620730 - 9620684
Alignment:
Q  405 gcttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 451  Q
    |||||||  ||||| |||||||||||||||||||||||| |||||||    
T  9620730 gcttaaagacatttgtgactccttaacctttaaaaagttatgatttt 9620684  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 532
Target Start/End: Complemental strand, 22057521 - 22057463
Alignment:
Q  474 aattttgctctctatccttaggaaaatgtgatcttttgactctatctatatgaacatat 532  Q
    |||||||| ||| ||||||| | ||||||| |||||||||||||| |||||||| ||||    
T  22057521 aattttgcgctcgatccttaaggaaatgtgttcttttgactctatatatatgaaaatat 22057463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 18524960 - 18525003
Alignment:
Q  407 ttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 451  Q
    |||||||||||||| || ||||||| |||||||||||||||||||    
T  18524960 ttaaatgcatttttaac-ccttaacttttaaaaagttgtgatttt 18525003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 451
Target Start/End: Original strand, 4104829 - 4104875
Alignment:
Q  405 gcttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 451  Q
    |||||| |||||||||||| ||||||| |||||||| ||||||||||    
T  4104829 gcttaagtgcatttttgacaccttaacttttaaaaaattgtgatttt 4104875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 449
Target Start/End: Original strand, 34257110 - 34257154
Alignment:
Q  405 gcttaaatgcatttttgactccttaacctttaaaaagttgtgatt 449  Q
    |||||||||||||||| || ||||||| |||||||||||| ||||    
T  34257110 gcttaaatgcatttttaaccccttaacttttaaaaagttgcgatt 34257154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 524
Target Start/End: Original strand, 31016230 - 31016283
Alignment:
Q  472 acaattttgctctctatccttaggaaaatgt-gatcttttgactctatctatat 524  Q
    |||||||||||||||||| ||| ||||||||   ||||||||||||||||||||    
T  31016230 acaattttgctctctatctttaagaaaatgtctttcttttgactctatctatat 31016283  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 426 - 462
Target Start/End: Complemental strand, 22845918 - 22845882
Alignment:
Q  426 cttaacctttaaaaagttgtgattttacccctctaac 462  Q
    |||||| ||||||||||||||||||||| ||||||||    
T  22845918 cttaacttttaaaaagttgtgattttactcctctaac 22845882  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 407 - 451
Target Start/End: Original strand, 338236 - 338280
Alignment:
Q  407 ttaaatgcatttttgactccttaacctttaaaaagttgtgatttt 451  Q
    ||||| || |||||||||||||||| |||||||||||| ||||||    
T  338236 ttaaaggcgtttttgactccttaacttttaaaaagttgggatttt 338280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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